Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00226 ATGGACggaaaacaaaacataacaaaCACACACCAATTCCAAGATAGAGGCGATATTGGATCGTCTTTATCAAAGCTTATTTTATCGAGCGGAACCAACACGCTCGATTCAATTTTCTCTGATATTCCCTCAACAAACACTTCAGTTACCGCAACCAACTACTTAGGTTCTTCGAATTTCGAACCTTTAGGTTCCTCTGTCTATCTTCGACAAAGGGACATCCTTCAAAAATTCTACGAAGAAACTCGATCAACGAGTTCCTTCATTCCATCTTCATTTTCAAATCAATCTTTAAACCCGTCTTTATACTCAACAATACCAAGTTCAAATTCGTTCACTTCTTTGTTGAACCCTTTGGATTTGAAGAAGAAGCTATACAGAGGAGTGAGACAGAGACATTGGGGAAAATGGGTAGCTGAAATTCGACTTCCTCAGAATAGAATGAGAGTTTGGCTTGGAACTTATGAAACTGCTGAAGCTGCAGCTTATGCTTATGATCGTGCAGCTTATAAGCTTAGAGGAGAATATGCACGTTTGAATTTTCCAAATTTGAAAGATCCAACTAAGTTGGGTTTTGGTGATTCTACTAAATTGAATGCTTTGAAGAATTCTGTTGATACTAAAATTCAAGCTATTTGTCAAAAGGTGAAAAgagaaaaagctaaaaaaattgctgctaagaagatgaagaagaagaatttagAGAATGATAATAAGAAAGAGGAAGTAGAGAAGATTaattcatcttcttgttcttcttcttcgtcttcaTTACCTTTGTCACCGTCGGTTTTTTATGAAGATTGGGTGAATGAATTGTTTTCACCAACTGTTTCTGAGGATGGAGTTTGGAAAGGGGAGAATTCGAATTCTCCGAATTCTGTTTCGACAATGGTGACTGAGGAGACAGAGTTTGAAGATTGTTCCTTTGCCTTAGCAAGGATGCCATCTTTTGATCCTGAATTGATTTGGGAAGTTCTTGCtgtttag 990 0.3384 MDGKQNITNTHQFQDRGDIGSSLSKLILSSGTNTLDSIFSDIPSTNTSVTATNYLGSSNFEPLGSSVYLRQRDILQKFYEETRSTSSFIPSSFSNQSLNPSLYSTIPSSNSFTSLLNPLDLKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYETAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDSTKLNALKNSVDTKIQAICQKVKREKAKKIAAKKMKKKNLENDNKKEEVEKINSSSCSSSSSSLPLSPSVFYEDWVNELFSPTVSEDGVWKGENSNSPNSVSTMVTEETEFEDCSFALARMPSFDPELIWEVLAV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00226 329 MobiDBLite consensus disorder prediction 227 259 - -
Tsu05g00226 329 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Tsu05g00226 329 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
Tsu05g00226 329 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Tsu05g00226 329 Coils Coil 217 249 - -
Tsu05g00226 329 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 328 - -
Tsu05g00226 329 MobiDBLite consensus disorder prediction 230 246 - -
Tsu05g00226 329 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Tsu05g00226 329 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Tsu05g00226 329 Gene3D AP2/ERF domain 125 183 IPR036955 GO:0003700|GO:0006355
Tsu05g00226 329 CDD AP2 124 184 IPR001471 GO:0003700|GO:0006355
Tsu05g00226 329 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 12 328 - -
Tsu05g00226 329 SUPERFAMILY DNA-binding domain 125 182 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00226 Tsu-Chr5 1664436 1665966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00226 18 328 AP2-EREBP Transcription Factor Family AT1G64380 47.929 1.07e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu05g00226 AP2 4.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00226 - - lja:Lj0g3v0046879.1 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00226 05 1664436 1665966 Tsu05g00226 05 1664436 1665966 ECH