Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00225 ATGGATCATGATACTAATAATATTGTAACCGACAATATTAATAAATCTAAACAAATTGAACGGCGTTATCTTGattatagaaagaaaagaaaacgtCCATCTAAAGTAGCGGTGATTCCGACGATGGAATCAACCACCGGAGACACCGCTACGGCGTCACATGGTTTTATATCGGTTATTGGAAGGAGGAGAGTGATGGAAGATGCTATTAAGGTGATTCCACGTTTTGTTGCGGCGGAAAAGCAACCGTgtggttatgatttttttgcGGTGTATGATGGTCACGGTGGTATGACGGTGGCGAATGCTTGTCGTGATAGGTTGCATGTTTTGTTGGCGGAGGAAGTGAAGGAGGGAAGGAGAAATGATGGGTTGGATTGGTGTAAGGCTATGTGTGAATGTTTTATGAAGATGGATAGAGAAATTGGTGTTGGTGGTGATGGTGATGTTGATGGGAACACGGTGGGTTCTACGGCGGCTGTTGTGGTGGTTGGGAAGGAGGAGATTGTGGTGGCGAATTGTGGTGATTCTAGGGCGGTTTTGTGTAGTGGCGGTGTAGCGGTGCCACTTTCACGTGATCATAAGCCAGATCTTCCTGATGAAAGAGAGAGGATTGAAGCAGCAGGTGGAAGAGTGATTAATTGGAATGGGAGTCGTGTTTTAGGAGTTCTTGCTACTTCTAGATCCATAGGGGATCACTGCATGAAGCCATTTGTGATATCTCAACCGGAGATAAACGTGTATGGAAGAACAAAATCAGATGAATTTGTTGTAGTAGCAAGTGATGGTCTTTGGGATGTAGTTTCTAACAATTTTGTTTGTGAAGTTGTAAGAAGTTGCCTCCAAGGTCATATGAGGATGAGGCAtcataataatcataatcataatcatataaaTGAAGATCATACTATTAAAACTTATGCAGCTGAAGCTGCAGCAATCTTAGCTGAATTGGCTATGGCTAAGGGAAGCAAAGACAACATTAGTGTTATTGTCATTCAGCTCAACACTAACATTTGA 1020 0.4049 MDHDTNNIVTDNINKSKQIERRYLDYRKKRKRPSKVAVIPTMESTTGDTATASHGFISVIGRRRVMEDAIKVIPRFVAAEKQPCGYDFFAVYDGHGGMTVANACRDRLHVLLAEEVKEGRRNDGLDWCKAMCECFMKMDREIGVGGDGDVDGNTVGSTAAVVVVGKEEIVVANCGDSRAVLCSGGVAVPLSRDHKPDLPDERERIEAAGGRVINWNGSRVLGVLATSRSIGDHCMKPFVISQPEINVYGRTKSDEFVVVASDGLWDVVSNNFVCEVVRSCLQGHMRMRHHNNHNHNHINEDHTIKTYAAEAAAILAELAMAKGSKDNISVIVIQLNTNI 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00225 339 PANTHER ALPHABET, ISOFORM E-RELATED 28 337 - -
Tsu05g00225 339 Pfam Protein phosphatase 2C 54 328 IPR001932 -
Tsu05g00225 339 SUPERFAMILY PP2C-like 50 336 IPR036457 -
Tsu05g00225 339 Gene3D - 48 338 IPR036457 -
Tsu05g00225 339 ProSiteProfiles PPM-type phosphatase domain profile. 53 335 IPR001932 -
Tsu05g00225 339 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 28 337 - -
Tsu05g00225 339 ProSitePatterns PPM-type phosphatase domain signature. 88 96 IPR000222 GO:0043169
Tsu05g00225 339 SMART PP2C_4 43 333 IPR001932 -
Tsu05g00225 339 CDD PP2Cc 53 335 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00225 Tsu-Chr5 1646869 1649388 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00225 48 335 PP2C-type Phosphatase Gene Family AT2G29380 47.333 1.78e-83 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00225 K14497 - gmx:100813248 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00225 05 1646869 1649388 Tsu05g00225 05 1646869 1649388 ECH