Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00216 ATGTCTACCTTGAaattttctttcatattttcCATACTCTTCTTACTTTTTCACTCAACAAAAAGCAAAACTCCAAATTGTGACAAAATATCATGTGGAAACCCTAATTTAGCATTGAAGTTCCCTTTCCAATTAGgacaagaaaatcaaattaacaataatCAAAGTGATCGATGTGGATACCAAGGATTTGAAGTATATTGCAACAATAAGAATCAAACTTTGCTTACACTCTCAAATTCAACATTTGATGTCAAATCTATTTCCTATGAGACACAAAGAATTTTGATCAACGGTCCTAAAGAGTGTCCACCAAAACAGTTTCTTCAAAACATAAACCTCAAAGATGATTCACCTTTCTTATGGGACGACTCTCACGtcaattatatttatgaaaatgtAACATTTCTCAATTGTACAAATTTTGCAAAGGACGGAAAGATTGGTGCTCTTCCTACTATACCTTGTCTAagaaataataatgatgataattaTTCTATCATGTATATGTTACAATCATCAACTCTTAATAATTCTTGGTGGAATCAATCATGTCATGAGATTGGTTTTGCTAAGGTTCCGGTCCAAGATTCTTCTGGTCAAATAAAAGGAATTTGGGATGGACTTCACTCTGATATAGTGTTGCGGTGGGATACACCTCATTGTTATTGTGAATCAGATCAATTTTGTGGCTTTTCAACGAATACGAGTCTTAATGTTACTTGTTACGATACCAGCTACATTTATGATCGCCCAGTTAACTATGTAGGTGATAAAAAGCCTAGACGCAGCTACTTTTTTCCAGTAGTATGGGGAATATCTgcaattttcttcttcatatgGATAGCTTTATCAGTATATAAAAATAGAATGGCGCAAAACAATAACCAACAAAGTCAAACCGTTACAAACACAGAACCAAATAATCGAGAACCACCTTGGTTTGTGTTTGGACTTGATCATTCAAAAATAGAACAATATCCAAAGATTCAACTAGGAGAGAGTGGACAATTGCCCAAGTCCATAGACAATGTTTGTTCAATATGTCTTAGTGAGTATAAACCAATGGAGACATTAAGGAGTATACCTCAATGTAATCATCATTTTCATGCTGATTGTATAGATGTTTGGCTCAAGATGAATGCTACTTGTCCTTTATGTCGAAACTTGCCAGAGTGA 1179 0.3232 MSTLKFSFIFSILFLLFHSTKSKTPNCDKISCGNPNLALKFPFQLGQENQINNNQSDRCGYQGFEVYCNNKNQTLLTLSNSTFDVKSISYETQRILINGPKECPPKQFLQNINLKDDSPFLWDDSHVNYIYENVTFLNCTNFAKDGKIGALPTIPCLRNNNDDNYSIMYMLQSSTLNNSWWNQSCHEIGFAKVPVQDSSGQIKGIWDGLHSDIVLRWDTPHCYCESDQFCGFSTNTSLNVTCYDTSYIYDRPVNYVGDKKPRRSYFFPVVWGISAIFFFIWIALSVYKNRMAQNNNQQSQTVTNTEPNNREPPWFVFGLDHSKIEQYPKIQLGESGQLPKSIDNVCSICLSEYKPMETLRSIPQCNHHFHADCIDVWLKMNATCPLCRNLPE 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00216 392 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 5 391 - -
Tsu05g00216 392 SMART ring_2 346 387 IPR001841 -
Tsu05g00216 392 Pfam Wall-associated receptor kinase galacturonan-binding 27 97 IPR025287 GO:0030247
Tsu05g00216 392 Pfam Ring finger domain 345 388 IPR001841 -
Tsu05g00216 392 CDD RING-H2_PA-TM-RING 345 388 - -
Tsu05g00216 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 391 IPR013083 -
Tsu05g00216 392 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 391 - -
Tsu05g00216 392 SUPERFAMILY RING/U-box 345 389 - -
Tsu05g00216 392 ProSiteProfiles Zinc finger RING-type profile. 346 388 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00216 Tsu-Chr5 1584052 1586052 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00216 27 391 C3H Transcription Factor Family AT2G46495 33.512 6.24e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00216 - - mtr:MTR_5g009190 414.461