Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00215 ATGTATATCTTACAATCATTAACTCTTAATAATTCTTGGTGGACTCAAGCATGTGATGAGATTGGTTTTGCTAAGGTTCTAGTCCAAGATTCTTCTGGTAAAAAAATGGGAATCTCGGATGGACTTCAATCTGATGTATTGTTGCGCTGGGATACACCTTGTTACTGTGAAGCAGATCAATTTTGTGGCTTTGTAACGGATATGGATCTTGATGTTACTTGTTACAATACCAGCTACTACATCTCAGGTGGAAATCCTACACCTTCGGAGCCTAAAAGTAACTACCCTCTTCAAGTAATATTGGTAGTACCTgcaattttcttcttcatatatatagcttTATCTGTATATAAAAATAGAATGGCGCAAAACAATAGCCATCAAAGTCAAATTGTTACAAACACAGAACCAAATAATCGAGAACCACCTTCGTTTGCGTTTGGACTTGATCATTCGACGATAGAAGAAAAATATCCAAAGATTCAACTAGCAGAGAGTGGACAATTGGCGAAGTCCATCATAGATAATGTTTGTTCGATATGTCTTAGTGAGTATAAGCCAATGGAGACATTAAGGAGTATACCTCAATGTAATCATCATTTTCATGCTGATTGTATAGATGTTTGGCTCAAGATGAATGCTACTTGCCCTTTATGTCGAAATTTGCCAGTGTGA 675 0.3556 MYILQSLTLNNSWWTQACDEIGFAKVLVQDSSGKKMGISDGLQSDVLLRWDTPCYCEADQFCGFVTDMDLDVTCYNTSYYISGGNPTPSEPKSNYPLQVILVVPAIFFFIYIALSVYKNRMAQNNSHQSQIVTNTEPNNREPPSFAFGLDHSTIEEKYPKIQLAESGQLAKSIIDNVCSICLSEYKPMETLRSIPQCNHHFHADCIDVWLKMNATCPLCRNLPV 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00215 224 ProSiteProfiles Zinc finger RING-type profile. 178 220 IPR001841 -
Tsu05g00215 224 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 223 - -
Tsu05g00215 224 Pfam Ring finger domain 177 220 IPR001841 -
Tsu05g00215 224 SUPERFAMILY RING/U-box 177 221 - -
Tsu05g00215 224 SMART ring_2 178 219 IPR001841 -
Tsu05g00215 224 CDD RING-H2_PA-TM-RING 177 220 - -
Tsu05g00215 224 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 11 223 - -
Tsu05g00215 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 223 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00215 Tsu-Chr5 1580301 1581078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00215 40 223 C3H Transcription Factor Family AT2G25410 34.518 1.12e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00215 - - mtr:MTR_5g009190 256.144