Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00192 ATGTCTGAAACACTACACTTTGGTGATGGTGTTACTGGAGAGAACAGAAAGCAAAAGCGCAAGATGGAGGAAGAAGTTGGTGCTGATTCTATTGTGTCATTGTCTTTGAGTATAGGAGGGGAGCAGAAGAAATACCCATGTAAGTTTTGCAATAAGATGTTTTCAAATCCTCAAGCCTTAGGAGGACACCAAAACGCCCATAGGCGTGAAAGGGTGCTTTCAAGAAtggacaaaaaaattcaaatgggAACTTTTGGACTTGGTCCCCATTTGTGTCCATGCTCAAAtcctcattatcatcatcaatatcCCTTCACTACTTCATGGTCGACACCTTTTAATCATGGAATTGGATGGCCTCATCTTGTTGCACCTACAGCCTATGGCAATCCATTTGGGATGATCAACAACTCTGCTTGGGCTACTCAAACTCCACTGAACAATAATATGGGATTTGAAAATTATGAATGTAATAATTTGCTGCAGGTTCCTTCATTTGGTGCTGCTCTTAACAGTTATTTTCTGATGGAAAATAACAATTACAATATACCAAATAACCACTAA 564 0.3688 MSETLHFGDGVTGENRKQKRKMEEEVGADSIVSLSLSIGGEQKKYPCKFCNKMFSNPQALGGHQNAHRRERVLSRMDKKIQMGTFGLGPHLCPCSNPHYHHQYPFTTSWSTPFNHGIGWPHLVAPTAYGNPFGMINNSAWATQTPLNNNMGFENYECNNLLQVPSFGAALNSYFLMENNNYNIPNNH 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00192 187 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Tsu05g00192 187 PANTHER ZINC FINGER PROTEIN JAGGED 42 185 IPR045320 GO:0003700
Tsu05g00192 187 MobiDBLite consensus disorder prediction 10 26 - -
Tsu05g00192 187 MobiDBLite consensus disorder prediction 1 26 - -
Tsu05g00192 187 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 42 185 - -
Tsu05g00192 187 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Tsu05g00192 187 Gene3D Classic Zinc Finger 29 84 - -
Tsu05g00192 187 SUPERFAMILY beta-beta-alpha zinc fingers 42 72 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00192 Tsu-Chr5 1401583 1402146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00192 39 121 C2H2 Transcription Factor Family AT1G67030 38.372 6.08e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu05g00192 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00192 - - mtr:MTR_2g067740 243.432