Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00184 atggGGTGCATTTGCTCAAAATACTCTTTAAACaaagacaaaattgaaaaatatggaAAAGAAAGTGACTGGAATAAGTCTTCGGTGCAACTAGTTGCTCCTACACACTTAAATGGAGTTGGAGTTGGCTTGGATGGTTCTAACTCGGTGCCTCGTTTGGCTAAGGCGTCTTCGCAAGTGGTTAGAGCAGAAGAAGAGAAAAGCAGTCACTTTGATGTTGCTATAAAAATTCAGCATCATAGATGTAAGACAGTAAGTTCTGGTATAGGTGAAAAAAAGCCACTAATGAGTAGAATACTCAGTGTgcaaaatttttcaaaagaacaATATGTTGATTCCGGGTGGCCGATATGGTTGTCTTCAGTTGCTAAAGAGGCTATCAAAGGTTGGGTTCCTAGAAGGGCGGACTCTTTTGAAAAATTAGACCAAATTGGACAAGGGGCATACAGTAGTGTGCACAAAGCTCTTGACCTTGAAAGTGGTAAATATGTGGCTTTAAAGAAAGTTCGATTTTCAAGTGGAGATGTTGAAAGTGTCCGTTTCATGGCAAGAGAAATCTATATTTTGCGTCAACTTGACCATCCTAACATCCTCAAGCTTGAAGGCATTGTCACATCTAGAACTTCAACTAGTTTGTACCTTGTTTTTGAATATATGGAGCATGACCTTGCTGGATTAGCAGCTAGACCTGCTGTCAAGTTCACTGAACCACAGATTAAATGTTTCATGAAACAATTGTTATCTGGGCTAGAACATTGTCATAGTAGGGGTGTGTTGCATCGTGACATCAAGGGCTCTAATCTTCTAGTTGATAGCAACGGAAATCTAAAGATTGGAGATTTTGGTCTAGCAACTGTCCATGAACCTGATAGCAAGGTGCCATTGACAAGTCGTGTCGTGACTCTCTGGTACAGGGCCCCTGAACTTTTACTAGGTGCTACTGACTATGGTGCTACAATTGACTTGTGGAGTGCTGGTTGCATTCTAGCTGAATTGTTGGTGGGTAAGCCTATCATGCCTGGAAGGACAGAGGTTGAACAAATGCACAAAATTTTTAAGCTTTGTGGTTCCCCATCTGAAGAGTATTGGCAAAGAAAAAAACTTCCATATGCAACAAGTTTTAAACCACAAAACGCTTACAAACGACAACTCGCCGATACATTTAAAGATTTTCCTTCTACTGCATTGGAACTTGTTGATAGACTCCTTTCAATGGAACCAGAACAACGAGGATCTGCAACTTCTGCCCTTCGGAGTGAGTTCTTCACTACAGATCCTTTGCCTTGTGATCCTTCACGTTTACCAAAGTTTCCACCAAGCAAGGAGTTCGATCTAAAGCGTCAAAATAAAGAAGCCGCaagAAAAAACCTAGAAGCTATCAAAGGATGCGGACCAAGAACTGTTGTAAGAGGAGCAGGAAATACCAAAGCATTGGAAGCACCAGAGTATAATGCCCGGGGAGATCTATCGTTGCGGGGTAAGCCAAATACTAGAATGTCCCGTCTTAGATATGAATCACAAGAAGATGAAGAGTCAAACCATAAGTGTGAACCAAGCAGAATATCtatgcacaacggctatacaaATTCTACAACATTGATGCACAGCAATACAACAGGAGCATCCTCGTTATGCAATAAGAGACCAGAATCATCTTTGCAAGATATTCCAGAGTTAAGGACACAAAGGTCTCATTTGAATGAAGCAGCAGTAGAATTCTCTATTAAAAAGGAAGAAGGCATGCCAGGCCAAGAAATCAGAATGGGGTATGTGCCCAAGAAAAATAGAATACATTGTTCTGGACCGTTGATGATGTCTTCCGGTGGAAATATTGATGACATGCTAAGAGAGCACGAACGGTTAATGCAAGATGTTTTCCGTAGTGTCAAGAAGGGGAATCCGTAA 1905 0.3995 MGCICSKYSLNKDKIEKYGKESDWNKSSVQLVAPTHLNGVGVGLDGSNSVPRLAKASSQVVRAEEEKSSHFDVAIKIQHHRCKTVSSGIGEKKPLMSRILSVQNFSKEQYVDSGWPIWLSSVAKEAIKGWVPRRADSFEKLDQIGQGAYSSVHKALDLESGKYVALKKVRFSSGDVESVRFMAREIYILRQLDHPNILKLEGIVTSRTSTSLYLVFEYMEHDLAGLAARPAVKFTEPQIKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLVDSNGNLKIGDFGLATVHEPDSKVPLTSRVVTLWYRAPELLLGATDYGATIDLWSAGCILAELLVGKPIMPGRTEVEQMHKIFKLCGSPSEEYWQRKKLPYATSFKPQNAYKRQLADTFKDFPSTALELVDRLLSMEPEQRGSATSALRSEFFTTDPLPCDPSRLPKFPPSKEFDLKRQNKEAARKNLEAIKGCGPRTVVRGAGNTKALEAPEYNARGDLSLRGKPNTRMSRLRYESQEDEESNHKCEPSRISMHNGYTNSTTLMHSNTTGASSLCNKRPESSLQDIPELRTQRSHLNEAAVEFSIKKEEGMPGQEIRMGYVPKKNRIHCSGPLMMSSGGNIDDMLREHERLMQDVFRSVKKGNP 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00184 634 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 74 626 - -
Tsu05g00184 634 ProSiteProfiles Protein kinase domain profile. 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00184 634 SUPERFAMILY Protein kinase-like (PK-like) 131 430 IPR011009 -
Tsu05g00184 634 MobiDBLite consensus disorder prediction 498 518 - -
Tsu05g00184 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Tsu05g00184 634 ProSitePatterns Protein kinases ATP-binding region signature. 144 167 IPR017441 GO:0005524
Tsu05g00184 634 Gene3D Transferase(Phosphotransferase) domain 1 221 461 - -
Tsu05g00184 634 SMART serkin_6 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00184 634 PANTHER CELL DIVISION PROTEIN KINASE 74 626 - -
Tsu05g00184 634 CDD STKc_CDK9_like 138 422 - -
Tsu05g00184 634 Gene3D Phosphorylase Kinase; domain 1 125 220 - -
Tsu05g00184 634 MobiDBLite consensus disorder prediction 487 523 - -
Tsu05g00184 634 Pfam Protein kinase domain 138 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00184 Tsu-Chr5 1334581 1337968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00184 130 455 Core Cell Cycle Gene Families AT5G10270 51.724 7.17e-118 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tsu05g00184 Pkinase 9.9e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00184 K08819 - gmx:100791743 879.396