Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00180 ATGAATTGGATTAGTTCAAGTTCAACAAGCACAAGTCATGGTAATGACAAGAAGCTTAAGGGAGTTCGGCGTCGGAAATGGGGGAAATGGGTGTCTGAGATTCGAGTTCCGGGGACTCAAGAGCGTTTATGGTTGGGAACTTATGCTACACCGGAGGCTGCTGCGGTGGCACACGACGTAGCTGTTTATTGTTTAAAGAGACCTTCTACTTTGGACAAACTCAATTTTCCTGATATTTTGTCTTCTTACTGTATTCAACAGAGAGATCATTTGATGTCTCCTAGGTCTGTTCAGAAGGTTGCTTCGGATATTGCTATGGATGTCGATGCGCGAAACATCGCAAGAGAAACAACGATGATCAATGAAACTACTCATCACATGAATGAGAATCAGCAGGTGCATAATGTTGTTGCTGATGATGTGTTTTGGTGGGAAGGTTTGGGTGGTGATGACTTGAGTTTGCAAGGAGTTACTCAAGTTTCTAGTCAACAAGAGGACTTGAACATTTCCATTGAAGATTATCTTTAG 528 0.4242 MNWISSSSTSTSHGNDKKLKGVRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDVAVYCLKRPSTLDKLNFPDILSSYCIQQRDHLMSPRSVQKVASDIAMDVDARNIARETTMINETTHHMNENQQVHNVVADDVFWWEGLGGDDLSLQGVTQVSSQQEDLNISIEDYL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00180 175 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 132 - -
Tsu05g00180 175 MobiDBLite consensus disorder prediction 1 20 - -
Tsu05g00180 175 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Tsu05g00180 175 MobiDBLite consensus disorder prediction 1 15 - -
Tsu05g00180 175 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Tsu05g00180 175 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Tsu05g00180 175 Pfam AP2 domain 18 66 IPR001471 GO:0003700|GO:0006355
Tsu05g00180 175 SUPERFAMILY DNA-binding domain 18 78 IPR016177 GO:0003677
Tsu05g00180 175 ProSiteProfiles AP2/ERF domain profile. 18 77 IPR001471 GO:0003700|GO:0006355
Tsu05g00180 175 CDD AP2 17 78 IPR001471 GO:0003700|GO:0006355
Tsu05g00180 175 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020 7 132 - -
Tsu05g00180 175 SMART rav1_2 18 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00180 Tsu-Chr5 1317364 1317891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00180 8 110 AP2-EREBP Transcription Factor Family AT1G71520 58.095 9.37e-39 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu05g00180 AP2 1.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00180 - - mtr:MTR_5g008790 260.766