Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00172 ATGGGATTTTGGGGAATTGAAGTTAAGCCTGGCACACCTGTTCCTTATCATACTGATAATGTGCAAGGAAAACTTCATGTCACTCAGGCTACTCTAGGAGATGGTTCATCAGGAGGTAAAAGCATTCTTCAGTGCTCTTCTGGACACAAAAATCCAGTTTTTCTGTGTACTTTGCTGCCAAATAAGGTTGAGACGTGCCCTTTGGATCTTAAGTTTGATGAGCAAGACTTGGTGGCATTCTCAGTCATCGGTTCACGAAGCATCCATCTTTCTGGTTATTTTGTGTCAGATGACGGGGAGGATGACCTAAGGGATGACTATGAATATGATTCATTGGGAGAGGACGTGGGAACTGATTCAGAGGAGTCATCTGAATATGACAGTGAAAATGGATACGATGATCATTTTTTTGACGATAGTGATATGGAAATGTACACATCTTCCCCAATCCGTAATAGTGGAGTTGTGATTGAGGAAATACCCGATGACAATCAGCCTGAAAATGGAGACGATCCAGCAAAACAATCGAAGAAAAAGGAACAGTCAGCTCTCTTGAAAGAGAAAGCCAGCAAAAGTTCTCAGCTTCTAGATGTCCCTAGTGGTGACAATAACCTCCTTGCTTTGGAAAGtgaagatgaagatggtttCCCAATTTCCACCTCAAAGAAAGTTAAAACTGAGTCTcagaagaaggaaaaagaacAAACCCACAAAAAAACTGGGAAATCCAATAAGAAGGAAAAAGATGTTGATCCGTCTGCTAGCTTAAAACGAAAAGGTCAAATTGTCGAAGAGGAGGAGCAGCTGCAAGATGGGAAGAAGACAAAGAAGAATAAGTTGAAAGATCATGCTAAGGAAGAAATTGCTCGTGTTAAGGAGACTAATGTTACTGTGCAAGATGAAAAGCATTCTGAGGGTGAGGAGGTTAAAACTACAGCCAACCAGAACAATGTTTCTCATGCAAATGCTGGAGATGACGGAAAACAATCAAATAATGAAGACCTTGTtgagaagaaaaacaacaagaaaaacaagaagaaaaagacCAAAGAGTCCGAAGGAGATGCTGCTGTTAAAGAAATTGCCACACCTGTTGAAAATCAGAAGTTGTCTACCTCTGTGAAAAAAGAGAAAGGTCAAACTGAAGCCAAACCATCTAATGTGGTTACCTATCCAAATGGGTTGATTATAGAGGACATATCTATGGGTAAACCAGATGGAAAAAGAGCTGATCTTGGAAAAAAGGTCAGTGTTAAATATATTGGCAAGCTAAAAAAAGATGggaaaatatttgattcatgtGTCGGAAAAGCACCCTTTAAGTTTCGCCTTGGTGTAGGACAAGTCATCAAGGGGTGGGATGTTGGCATCAATGgGATGAGGGTTGGAGACAAAAGAAGACTTACCATTCCACCATCTATGGGATATGGAGACAAACGCATCGGGGCTATACCACAAAATTCATGGCTTGTATTTGATGTTGAGTTGGTTGGTGTTGGCAACTAA 1506 0.3851 MGFWGIEVKPGTPVPYHTDNVQGKLHVTQATLGDGSSGGKSILQCSSGHKNPVFLCTLLPNKVETCPLDLKFDEQDLVAFSVIGSRSIHLSGYFVSDDGEDDLRDDYEYDSLGEDVGTDSEESSEYDSENGYDDHFFDDSDMEMYTSSPIRNSGVVIEEIPDDNQPENGDDPAKQSKKKEQSALLKEKASKSSQLLDVPSGDNNLLALESEDEDGFPISTSKKVKTESQKKEKEQTHKKTGKSNKKEKDVDPSASLKRKGQIVEEEEQLQDGKKTKKNKLKDHAKEEIARVKETNVTVQDEKHSEGEEVKTTANQNNVSHANAGDDGKQSNNEDLVEKKNNKKNKKKKTKESEGDAAVKEIATPVENQKLSTSVKKEKGQTEAKPSNVVTYPNGLIIEDISMGKPDGKRADLGKKVSVKYIGKLKKDGKIFDSCVGKAPFKFRLGVGQVIKGWDVGINGMRVGDKRRLTIPPSMGYGDKRIGAIPQNSWLVFDVELVGVGN 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00172 501 MobiDBLite consensus disorder prediction 104 147 - -
Tsu05g00172 501 MobiDBLite consensus disorder prediction 310 329 - -
Tsu05g00172 501 PANTHER PEPTIDYLPROLYL ISOMERASE 267 499 - -
Tsu05g00172 501 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 408 497 IPR001179 GO:0003755
Tsu05g00172 501 Gene3D Nucleoplasmin core domain 1 100 - -
Tsu05g00172 501 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 267 499 - -
Tsu05g00172 501 MobiDBLite consensus disorder prediction 104 128 - -
Tsu05g00172 501 MobiDBLite consensus disorder prediction 167 186 - -
Tsu05g00172 501 PIRSF FK506-bp_FPR3 49 280 IPR023566 GO:0003755
Tsu05g00172 501 PIRSF FK506-bp_FPR3 251 500 IPR023566 GO:0003755
Tsu05g00172 501 PIRSF FK506-bp_FPR3 1 54 IPR023566 GO:0003755
Tsu05g00172 501 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 1 250 - -
Tsu05g00172 501 Coils Coil 281 301 - -
Tsu05g00172 501 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 413 500 IPR001179 GO:0003755
Tsu05g00172 501 Gene3D - 359 500 IPR046357 GO:0003755
Tsu05g00172 501 SUPERFAMILY FKBP-like 376 499 - -
Tsu05g00172 501 Coils Coil 332 352 - -
Tsu05g00172 501 MobiDBLite consensus disorder prediction 160 360 - -
Tsu05g00172 501 MobiDBLite consensus disorder prediction 215 309 - -
Tsu05g00172 501 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Tsu05g00172 501 PANTHER PEPTIDYLPROLYL ISOMERASE 1 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00172 Tsu-Chr5 1259184 1263726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00172 413 497 Calmodulin-binding Proteins AT3G25230 50.575 1.10e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00172 K14826 - gmx:100789099 612.838