Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00168 ATGGAACAATCAAACAACATGCATCAAGAACATGTTCAAATTGTTCCTCCAACTACAACATCTTATATAGGAGTTAGGAAAAGAAAATGGGGAAAATTTGTATCAGAAATAAGAGAACCAGGTAAGAAAAGTAGAATTTGGTTAGGAAGCTATGAAGAACCACAAATGGCAGCAGCAGCTTATGATGTAGCAGCATTTCATCTCAAAGGTCGTGCCGCGAGGCTAAATTTTCCCGAATTGGTTGAGAAACTTCCAATCCCTTCAAGTTCTGAAGCAGAGGATATTCGTGTAGCAGCTCAACAAGCCGCATTGCAGTTCAAGACAAGAGCATCGTCACGAATATCCTCTGCTTCAGGCTCTGAAGGGGGTGGCAATGGCAATAGCAATAGTAATGGAAATGTTGTTCCTTCTGCGAGAGTTGGGCTTTCACCTTCTCAAATTCAAGCAATTAATGAGTTTCCTTTTGATTCACCAAAGatgtttggatttgaatttgatgaatCTAGGATGATGTTTTATGATGATAATAGTGTTTTAGAGTTGAGTGAATGGGAAGAAATTCAGTATGACTCATTGTGGGACTAG 585 0.3829 MEQSNNMHQEHVQIVPPTTTSYIGVRKRKWGKFVSEIREPGKKSRIWLGSYEEPQMAAAAYDVAAFHLKGRAARLNFPELVEKLPIPSSSEAEDIRVAAQQAALQFKTRASSRISSASGSEGGGNGNSNSNGNVVPSARVGLSPSQIQAINEFPFDSPKMFGFEFDESRMMFYDDNSVLELSEWEEIQYDSLWD 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00168 194 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Tsu05g00168 194 MobiDBLite consensus disorder prediction 113 138 - -
Tsu05g00168 194 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Tsu05g00168 194 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Tsu05g00168 194 PRINTS Ethylene responsive element binding protein signature 60 80 IPR001471 GO:0003700|GO:0006355
Tsu05g00168 194 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Tsu05g00168 194 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Tsu05g00168 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 4 194 - -
Tsu05g00168 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 194 - -
Tsu05g00168 194 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Tsu05g00168 194 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00168 Tsu-Chr5 1229105 1229689 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00168 20 194 AP2-EREBP Transcription Factor Family AT1G71450 51.136 1.45e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu05g00168 AP2 6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00168 - - cam:101493379 246.128