Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00160 ATGATACTTGTTGGTGGAAATAACTTCACTACATTgatgttgaaattgaaatccaaaaagcttatgcaccatgcattCCCCAAATTTTGTATATTGCAGAATCTTTACACTTCAATTGCACAACCAGAAACACAAACCATAGCTAGAAATGTAAACACACAAATACACAATCTTTCCTTGCAAGGAAAACTTGAAGAAGCAATTTCACTTGCTTACACCAACCCTTCTCTATCTCTTCAAGACTATGCCTTTTTGTTCCATGCTTGTGCTCAGAAAAAGTACTTCCAACAAGGCATGGCATTGCACCATTACATACTAGAAAAACACCCCACAATTCAAAATGATCTTTTTCTCACTAATAACCTCTTGAACATGTACTGCAAGTGTGGCCATGTTGATTATGCTCGCTACCTGTTTGATCAAATGCCGAGAAGAAACTTTGTTTCTTGGACTGTTCTTATTTCTGGATATGCTCAATTTGGCTTAATCAGAGAGTGTTTTGCTTTATTTTCGGGTATGTTGGCTTGGTTTCGCCCTAATGAATTTGCTTTTGCAAGTGTGCTTAGTGCTTGTGAGGAGTGTGACATCAAATATGGCTTGCAGGTACATGCTGTTGCTTGTAAACTTTCATTGGATTTCAATGTATTTGTTGGAAATGCTCTTATTACAATGTATAGTAAGTGTTGTGGTGGTTTCGGTGGAGGTTGTGATCAAACTTCGGATGATTCGTGGACTGTGTTCAAGTCAATGGAGTATAGAAATCTTATATCTTGGAATTCGATGATTTCAGGTTTTCAATTCCGTGGACTTGGTGACAAAGCTATTGGTCTGTTTTCACATATGTATTGCAATGGAATTGGGTTTAACAGTGCCACATTACTCGGTGTCTTCTCTTCTTTGAATCAATGCAGTAGTACTTTGGATGACATCAATAACACATATCTGAGGAACTGTACTCAATTGCACTGTCTCACTATTAAAAGTGGTCTTATTTCAGAAGTTGAAGTAGCAACTGCATTGGTAAAATCCTATGCAAATCTAGGGGGTCACATTTCTGACTGTTATAGGCTTTTCCTTGATACAAGTGGGCAACATGATATTGTGTCATGGACTGCTATTATTTCTGTGTTTGCAGAGCGAGATCCGGAGCAAGCTTTCCTTCTTTTCTGTCAACTTCATCGgaatttttttgtgttggaCCGGTATACATTCTCAATCGCCTTAAAAGCTTGTGCATACTTTGTGACTGAGAAAAATGCAATGGCAGTTCACTCACAAGTAATTAAACAAGGGTTTCGGGAAGACACGGTTGTTTCAAATGCCTTGATACATGCATATGGGAGGTCTGGCTCCTTAGCTTTGTCTAAACAAGTATTTGATGAAATGCGTTGCCATGATTTAGTTTCTTGGAATTCAATGCTCAAGTCTTATGCCATGCATGGTCGAGCTAAAGATGCATTGGAGCTCTTCAAGCAAATGGATGTCCATCCAGATTCTGCAACCTTTGTTGCGCTTCTCGCAGCTTGCAGTCATGCTGGACTCGTTGACGAAGGAGTGAAAATTTTCAACTCTATGACTGAAAGTCATGGTATTGCTCCGCAACTAGATCACTATGCCTGCATGGTTGACCTTTACGGACGAGCTGGGCAGATATTTGAGGCTGAAGAGTTGATACGCAAAATGCCAATGAAACCTGATTCTGTGATTTGGAGTTCATTACTTGGATCTTGCAGGAAGCATGGCGAGGCTGACTTGGCCAAATTGGCAGCTGATAAATTTAAAGAGTTAGATCCTAAAAACTCGTTGGCGTATATACAAATGTCAAACATATATTCCTCTGGAGGTAGTTTTATTGAAGCTGGCCTTATGCGGAAGGAAATGAGAGACTCTAAAGTGAGAAAAAGACCCGGTTTAAGCTGGGTCGAGGTTGGGAAGCAGGTTCATGAGTTCACATCTGGTGGGCAACGCCATCCACAAAGAGAGTCCATATTGAGCCGGCTCGAGACATTGATCGGACAATTGAAAGAAATAGGTTATGCTCCAGAGATTAGCTCTGCATTGCATGACATTGAAGTGGAGCACATAGAAGACCAATTGTTTCATCATAGTGAGAAGATGGCACTGGTATTTGCTATAATGAATGAAGCAAGTCTTCCCGGTGGTGGAAATGTCATTAAAATAATGAAGAATATCCGTATTTGCGTGGATTGTCATAACTTTATCAAATTAGCATCAAAACTATTTCAGAAGGAGATTGTTGTAAGAGATTCGAATCGCTTTCACCATTTCAAATATGCAACTTGTTCTTGTAATGACTATTGGTAA 2325 0.3875 MILVGGNNFTTLMLKLKSKKLMHHAFPKFCILQNLYTSIAQPETQTIARNVNTQIHNLSLQGKLEEAISLAYTNPSLSLQDYAFLFHACAQKKYFQQGMALHHYILEKHPTIQNDLFLTNNLLNMYCKCGHVDYARYLFDQMPRRNFVSWTVLISGYAQFGLIRECFALFSGMLAWFRPNEFAFASVLSACEECDIKYGLQVHAVACKLSLDFNVFVGNALITMYSKCCGGFGGGCDQTSDDSWTVFKSMEYRNLISWNSMISGFQFRGLGDKAIGLFSHMYCNGIGFNSATLLGVFSSLNQCSSTLDDINNTYLRNCTQLHCLTIKSGLISEVEVATALVKSYANLGGHISDCYRLFLDTSGQHDIVSWTAIISVFAERDPEQAFLLFCQLHRNFFVLDRYTFSIALKACAYFVTEKNAMAVHSQVIKQGFREDTVVSNALIHAYGRSGSLALSKQVFDEMRCHDLVSWNSMLKSYAMHGRAKDALELFKQMDVHPDSATFVALLAACSHAGLVDEGVKIFNSMTESHGIAPQLDHYACMVDLYGRAGQIFEAEELIRKMPMKPDSVIWSSLLGSCRKHGEADLAKLAADKFKELDPKNSLAYIQMSNIYSSGGSFIEAGLMRKEMRDSKVRKRPGLSWVEVGKQVHEFTSGGQRHPQRESILSRLETLIGQLKEIGYAPEISSALHDIEVEHIEDQLFHHSEKMALVFAIMNEASLPGGGNVIKIMKNIRICVDCHNFIKLASKLFQKEIVVRDSNRFHHFKYATCSCNDYW 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00160 774 Pfam E motif 580 642 IPR046848 -
Tsu05g00160 774 TIGRFAM PPR: pentatricopeptide repeat domain 120 148 IPR002885 -
Tsu05g00160 774 TIGRFAM PPR: pentatricopeptide repeat domain 468 493 IPR002885 -
Tsu05g00160 774 TIGRFAM PPR: pentatricopeptide repeat domain 440 467 IPR002885 -
Tsu05g00160 774 TIGRFAM PPR: pentatricopeptide repeat domain 501 533 IPR002885 -
Tsu05g00160 774 Gene3D Tetratricopeptide repeat domain 414 493 IPR011990 GO:0005515
Tsu05g00160 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Tsu05g00160 774 SUPERFAMILY TPR-like 87 623 IPR011990 GO:0005515
Tsu05g00160 774 Pfam PPR repeat 468 493 IPR002885 -
Tsu05g00160 774 Pfam PPR repeat 538 562 IPR002885 -
Tsu05g00160 774 Pfam PPR repeat 439 465 IPR002885 -
Tsu05g00160 774 Pfam PPR repeat 120 147 IPR002885 -
Tsu05g00160 774 Pfam PPR repeat 256 286 IPR002885 -
Tsu05g00160 774 Pfam PPR repeat 148 174 IPR002885 -
Tsu05g00160 774 Pfam PPR repeat 501 528 IPR002885 -
Tsu05g00160 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 465 IPR002885 -
Tsu05g00160 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 533 IPR002885 -
Tsu05g00160 774 PANTHER - 24 686 - -
Tsu05g00160 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 496 IPR002885 -
Tsu05g00160 774 Gene3D Tetratricopeptide repeat domain 316 413 IPR011990 GO:0005515
Tsu05g00160 774 Gene3D Tetratricopeptide repeat domain 194 315 IPR011990 GO:0005515
Tsu05g00160 774 Pfam DYW family of nucleic acid deaminases 678 774 IPR032867 GO:0008270
Tsu05g00160 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 115 149 IPR002885 -
Tsu05g00160 774 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 24 686 - -
Tsu05g00160 774 Gene3D Tetratricopeptide repeat domain 48 193 IPR011990 GO:0005515
Tsu05g00160 774 Gene3D Tetratricopeptide repeat domain 494 662 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00160 Tsu-Chr5 1185097 1187421 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00160 82 774 Glycoside Hydrolase AT3G49170 35.926 4.94e-133 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00160 - - mtr:MTR_5g008260 1382.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00160 05 1185097 1187421 Tsu01g04513 01 52750389 52757370 PCT