Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00140 ATGGGAACAAGAAACTTTCTATGGAATTTCACCAAAAAATTCGTCACATTCGGTCTCATTACTGTCACTGTCTCTGATCGTTATGTAACTGTTGTTCCTGTTCGTGGTGGCTCTATGTCTCCTACTTTCAATCCCAAAACTGATTCTTTCACAGATGATTATGTCTTGGTGGAGAAATTTTGCCTTCAGAAGTATAAGTTTTCACATGGCGATGTCGTGATCTTCCGTTCACCATCGAATTACAAGGAGACACACATAAAGAGAATAATTGCATTACCTGGTGAGTGGTTTGTTACTCGTCATGACCAAGATGTACATAAGGTTCCAGATGGACATTGCTGGGTCGAGGGAGACAATGCAGCTTCTAGCACAGATTCAAAATCATATGGACCTattcctTTGGGTCTAGTACGAGGAAGGGTTACGCATGTTGTGTGGCCTCCGCAAAGAATAGGAGCTGTCAAGAATAATAATACACCAGAAAAATTACCTTCTTCATAG 501 0.4052 MGTRNFLWNFTKKFVTFGLITVTVSDRYVTVVPVRGGSMSPTFNPKTDSFTDDYVLVEKFCLQKYKFSHGDVVIFRSPSNYKETHIKRIIALPGEWFVTRHDQDVHKVPDGHCWVEGDNAASSTDSKSYGPIPLGLVRGRVTHVVWPPQRIGAVKNNNTPEKLPSS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00140 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 85 97 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tsu05g00140 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 108 127 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tsu05g00140 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 27 43 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tsu05g00140 166 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 1 161 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Tsu05g00140 166 Pfam Signal peptidase, peptidase S26 8 96 IPR019533 GO:0004252|GO:0006465
Tsu05g00140 166 Pfam Signal peptidase, peptidase S26 102 146 IPR019533 GO:0004252|GO:0006465
Tsu05g00140 166 Gene3D Umud Fragment, subunit A 26 160 - -
Tsu05g00140 166 CDD S26_SPase_I 31 141 IPR019533 GO:0004252|GO:0006465
Tsu05g00140 166 TIGRFAM sigpep_I_bact: signal peptidase I 19 102 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tsu05g00140 166 SUPERFAMILY LexA/Signal peptidase 29 154 IPR036286 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00140 39 154 MADS-box Gene Family AT1G29960 36.066 1.24e-19 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00140 K09648 - gmx:100527429 260.381