Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00134 ATGTGGCATTTGATGTCGACGGTTGACTTGTTGAAGCATGACATTTCAGACCCATCCTTGCTGGCTTCATCCCTTTCACATAACTCTAGCTCAGGGCATGATAACAATAACAAAGTTCCTGAATGTGAATACATGGCTACTCCTGTTTTTGTACATACCAAGCTACAAGATCAAGAGTTGACTTCTAAAAATTGTTTGAAGCTGAAGAAGGCACTCATGCAGTATTTCAAACCATCCTCTTTTGTTGGAGAAAACACTGGAAACAAGCCCAGCGAAGAAAATCACTTGGATTCTGACACACTAAATTTGTTTACGATTCCATTTAAGAAAAAAGAGGAAAATCCAAGAGCTCAGCATGAGAGTTACATTTCTGCTCTATGGAAATTAAGGGATCAGATTTTAGCGATGAAGTCGCCATCTTTCAGGAGACCGGTGTCTGAGCGTGAATGGTTGAAAAATTCAGCCAAGATATGGGAACAGgcATACAAAGAGGTTCGTTGCTGGCCACCGACGACCGCTGTTTTCTCCGTTCAATTTCAATCGAGGAACATGATGAGGCTGAAGACATATGCTGGTCTTAGTTTGATTGCAACTTTGGCTATTACATATCATGCATTTAACAGTAGAGGCCAGTTTTATCCGGCAATGGTGTATCTTTCGACATCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTTTGGTTATCATGTGTGTTCTGTGGCAACTAACGAAGAAGGTATTCTTGGGTAATCTTCGAGAAGCGGAGGTTGAGAGGCTTAATGAACAATCTTGGAGGGAGGTTATGGAGATTCTCTTTGCGATTACTATTTTTAGGCAGGATTTCTCGGTTACTTTCCTAGCGATGGTTACTGCGCTGTTGTTAATTAAGGCTTTGCATTGGTTGGCTCAAAAGAGAGTGGAGTACATTGAGACCACTCCTACGGTGACCACGCTGTCCCATATTCGGATTGTGTCTTTTATGGGTTTCCTCCTTCTTCTAGATAGCATTTTCTTATATAGTTCTTTGAAGCATTTGATAGAAACATGGCAGGCTTCTGTTTCGCTGTTCTTTGCATTTGAGTACATGATATTAGCAACAACAACAGTGtcaatttttgtaaaatatgttttctatGTCAGTGACATGCTAATGGAGGGACAGTGGGAAAAGAAACCAGTCTTCACATTTTACCTGGAACTTGTTAGGGACTTGCTACACTTGTCCATGTATCTCTGCTTCTTCTGTGTTATTTTTGTAAACTACGGCATTCCCTTGCACCTAATACGGGAGCTGTACGAGACATTTAGGAACTTCAAAGTTCGCATTGCAGATTACATTAGATATCGGAAGATCACTTCGAATATGAATGATCGCTTTCCAGATGCAACCCCTGAAGAGCTCATTGCTAGTGATGCAACTTGCATTATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTGATATGTGGACATCTTTTTCATGTCCATTGCCTCCGATCATGGCTGGAACGACAGCATACTTGCCCTACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGAACAACTGTTGCTGGAGGGCAGCAAGGATCACAACCAGATGGTCAACGACAGGGCACTGGAAGCACAGGTCAAACTGGGCCTGGCAGTGGGGTGGCAACTGATAGTTTGAGTCGGCATCAAGCTAGACTCCAAGCAGCAGCTGCTGCAGCTTCAATATATGAGAAGTCTTATGTTTATCCCTCTGCAACTGTACGACCTCCTGGAGAACAAGCTTCCAGTCAACAAGCCCAGCAGCAGTTTCATATTCCTGGTGGGCCAGCAAATGTATCCTTTCCTCCAATGGGGCACTTCCATTTTATTCCTTCCCAACCACATATGACCCTTTTGAATTATGGAGAGGGGTTTGGAAATGATCCAAATATCCAAAGCTTGCAGTTGGAagctaataaaaaattactgcAACAACAGATTGAGATTCTGCAAAATCATCTACAGAATCTGCAGTTCACCGAGGCTGAGAGACGTGTAGATGATGggacatcatcatcatcagaaagCAGAGGCAAGCTTAGCACTTCCGCAGAGAATCAAGATTGA 2103 0.4189 MWHLMSTVDLLKHDISDPSLLASSLSHNSSSGHDNNNKVPECEYMATPVFVHTKLQDQELTSKNCLKLKKALMQYFKPSSFVGENTGNKPSEENHLDSDTLNLFTIPFKKKEENPRAQHESYISALWKLRDQILAMKSPSFRRPVSEREWLKNSAKIWEQAYKEVRCWPPTTAVFSVQFQSRNMMRLKTYAGLSLIATLAITYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCVLWQLTKKVFLGNLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVTTLSHIRIVSFMGFLLLLDSIFLYSSLKHLIETWQASVSLFFAFEYMILATTTVSIFVKYVFYVSDMLMEGQWEKKPVFTFYLELVRDLLHLSMYLCFFCVIFVNYGIPLHLIRELYETFRNFKVRIADYIRYRKITSNMNDRFPDATPEELIASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTVAGGQQGSQPDGQRQGTGSTGQTGPGSGVATDSLSRHQARLQAAAAAASIYEKSYVYPSATVRPPGEQASSQQAQQQFHIPGGPANVSFPPMGHFHFIPSQPHMTLLNYGEGFGNDPNIQSLQLEANKKLLQQQIEILQNHLQNLQFTEAERRVDDGTSSSSESRGKLSTSAENQD 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00134 700 PANTHER - 184 548 - -
Tsu05g00134 700 MobiDBLite consensus disorder prediction 685 700 - -
Tsu05g00134 700 SUPERFAMILY RING/U-box 455 519 - -
Tsu05g00134 700 MobiDBLite consensus disorder prediction 672 700 - -
Tsu05g00134 700 Coils Coil 645 675 - -
Tsu05g00134 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 447 520 IPR013083 -
Tsu05g00134 700 MobiDBLite consensus disorder prediction 586 608 - -
Tsu05g00134 700 MobiDBLite consensus disorder prediction 588 606 - -
Tsu05g00134 700 SMART ring_2 475 512 IPR001841 -
Tsu05g00134 700 ProSiteProfiles Zinc finger RING-type profile. 475 513 IPR001841 -
Tsu05g00134 700 CDD RING-H2_synoviolin 472 513 - -
Tsu05g00134 700 Pfam Ring finger domain 474 513 IPR001841 -
Tsu05g00134 700 MobiDBLite consensus disorder prediction 523 561 - -
Tsu05g00134 700 PANTHER RING ZINC FINGER PROTEIN 184 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00134 Tsu-Chr5 976371 985988 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00134 184 691 C3H Transcription Factor Family AT3G16090 66.216 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00134 K10601 - gmx:100782356 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00134 05 976371 985988 Tsu05g00134 05 976371 985988 ECH