Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00133 ATGTTTTCATTAGCACCTTCTATTGATGCCAAACAAACAACTACTACAGAAGTCTATGCAGATTCTGTAGTAATTaaccaacaaaaacaagaaCCCTCTGATGATTATGATTCTACTaatcatatatttaaatctaaattacCAGATATACCAATTTCTAACCACCTCCCACTTCACACATACTGCTTcgagaaacttcccaaaatctCCAATCGTCCTTGTCTCATCGTCGCTTCCACTGGACAAACATACACCTATGCAGAAACTCATCTTCAATGTCGAAAAATTGCAGCCGGTTTATCCAAATTAGGAATCCAAAAAGGCGATGTAATCATGATTCTACTCCAAAATTCAGCTGAATTTGTTCTCTCTTTCCTCGCCGCCTCCATGATCGGTGCAGTCGCAACCACAGCTAATCCATTATATTCCAGCGCCGAGATCTTCAAACAAATAACTGCTTCCAAAACAAAGTTAATCATCACACAAGCAATGCACGTTGATAAACTGAATCAGAACGAGGAGAAGGATCAAATAATTGATTTCAAGATAATCACCATCAATGATCCGCCGGTGAATTGTTTACCTTTCTCGATGATTTCTGAAGCAAATGAAGATGAATTACCGGAAGTGGAATTTGATCCGGAAGACGCGGCTGCACTTCCGTTTTCTTCCGGAACAACAGGATTACCTAAAGGAGTAATTTTAACGCATAAGAGCTTAATAACAGGAGTTGCTCAACAAGTTGatggagagaatccaaatctGTATCTAACAAAAGAAGATGTTCTTCTTTGCGTTCTTCCATTGTTTCATATATATGCGCTCAGCACTGTGCTATTGTGCGCACTGAGAGCAGGGAGTGCGATTCTGTTAATGCATAAATTCGAGATCGGAACGTTGCTTGGCGTTATACCGAAACATAAAGTGACGGTGGCAATGGTTGTTCCGCCATTAGTTTTGGCGTTAGCGAAGAATCCTAAGGTGGCGGAATTTGATCTTAGTTCGATAAGGTTGGTGCTTTCAGGAGCTGCGCCGTTAGGAAAGGAGCTTGAAGAAATGCTTCATAACCGAATTCCTCAAGCCGTTTTGGGACAAGGATATGGTATGACAGAGGCAGGTCCAGTTCTATCCATGTCTTTGAGTTATGCAAAACATCCATTGCCAGTAAACTCAGGTTCATGTGGTACCGTTGTAAGAAATGCCGAGCTCAAAGTTCTTGACCCTAAAACTGGTCGTTCTCTTGGTTATAATCAACCTGGTGAAATTTGCATTCGAGGCCAACAAATCATGAAAGGATATTTGAATGATAAGAATGCAACAAAAGAAACTATTGATGAAGAGGGTTGGCTTCATACCGGTGATATTGGTTATATAGATGACAATGATGAGATTTTCATAGTTGACAGGGTGAAGGAACTCATCAAATTCAAAGGCTTCCAAgTGCCCCCTGCTGAACTTGAAGCCATTCTAGTAAGTCATCCATCTATTGCAGATGCAGCTGTTGTCCCGCAAAAGGATGTTGCTGCTGGTGAAGTTCCTGTTGCCTTTGTGGTAAGATCAAATGAACTTGATCTAACTGAAGAAGCTGTAAAGGAGTTTATAGCTAAACAGGTTGTATTTTACAAGAGGCTGCACAAAGTTTACTTCATTCATGCAATTCCAAAGTCTCCATCAGGAAAGATACTGAGGAAAGACCTCAGAGCAAAGTTAGAAAATATACCAATTTCTAACCACCTCCCACTTCACACCTACTGCTTCGAGAAACTCCCTGAAATCTCTCATCGACCTTGTCTTATCGTCGCTTCCACCGGAAAAACATACACATATGCTGAAACTCATCTCCAATGTCGAAAAATCGCAGCCGGTTTATCTAAATTAGGAATCCAAAAAGGCGATGTAATCATGATTCTCCTCCAAAATTCAGCTGAATTTGTTTTCTCCTTCCTCGCTGCCTCCATGATCGGTGCAGTCGCCACCATGGCTAATCCTTTCTACACTAGCTCCGAGatcttcaaacaaataaccGCTTCCAAGACGAAGCTAATTATCATGCAAGCAATGTACGTTGACAAACTGAAGCAGAACGAGGAGAAGAATGAATTAATTGATTTCAAGATAATCACCGTCGATGAACCGCCGGTGAATTGTTTACATTTCTCGGTGATATCTGAAGCAAATGAAGATGAATTACCGGAAGTGGAGTTTGATCCGGAAGATGTGGTGGCGCTTCCGTTTTCTTCCGGAACAACAGGATTACCTAAAGGAGTGATTCTAACGCATAAGAGCTTAATAACAGGAGTTGCTCAACAAGTTGATGGAGAGAATCCACACATGTATTTAACAACAGAAGATGTTCTTCTTTGCGTTCTTCCATTGTTTCATATATTTGCGCTCAGCACTGTGCTATTGTGCGCACTGAGAGCAGGGAGTGCGGTTCTGTTGATACATAAATTCGAGATCGGAACGTTGCTTGGTCTTATACCGAAACATAAAGTGACGGTGGCGACGGTTGTTCCGCCGCTGGTTTTGGCTTTGGCGAAGAATCGTATGGTGGCGGAATATGATCTTGGTTCCATAAGGTTGGTGCTTTCAGGAGCTGCGCCGTTAGGGAAGGAGCTTGAAGAATCGCTTCATAACCGAATTCCTCTAGCCGTTTTAGGACAGGGATATGGTATGACAGAGGCAGTTATATCCATGTCTTTGAGTTTTGCAAAGCATCCATTACCAGTAAACTCAGGTTCATGTGGCACCGTTGTAAGAAATGCCGAGCTCAAAGTGCTTGACCCTAAAACTGGTCGTTCTCTTGGTTATAATCAACCTGGTGAAATTTGCATTCGAGGCCAACAAATCATGAAAGGATATTTGAATGATGAGAATGCAACAAAAACTACTATTGATGAAGAGGGATGGCTTCACACAGGTGATGTTGGATATATAGATGACAACGATGAAATTTTCATAGTTGACAGGGTGAAGGAACTCATCAAATTCAAAGGCTTCCAAGTGCCCCCTGCTGAACTTGAAGCCATTCTAGTAAGTCATCCATCTATTGCAGATGCAGCTGTTGTCCCGCAAAAAGACGTTGCTGCTGGTGAAGTTCCTATTGCCTTTGTGGTAAGATCAAATGGACTTGATCTAACTGAAGAAGTTGTAAAGGAGTTTATAGCTAAACAGCTGAACCAAGTCAAAAACTGA 3195 0.4063 MFSLAPSIDAKQTTTTEVYADSVVINQQKQEPSDDYDSTNHIFKSKLPDIPISNHLPLHTYCFEKLPKISNRPCLIVASTGQTYTYAETHLQCRKIAAGLSKLGIQKGDVIMILLQNSAEFVLSFLAASMIGAVATTANPLYSSAEIFKQITASKTKLIITQAMHVDKLNQNEEKDQIIDFKIITINDPPVNCLPFSMISEANEDELPEVEFDPEDAAALPFSSGTTGLPKGVILTHKSLITGVAQQVDGENPNLYLTKEDVLLCVLPLFHIYALSTVLLCALRAGSAILLMHKFEIGTLLGVIPKHKVTVAMVVPPLVLALAKNPKVAEFDLSSIRLVLSGAAPLGKELEEMLHNRIPQAVLGQGYGMTEAGPVLSMSLSYAKHPLPVNSGSCGTVVRNAELKVLDPKTGRSLGYNQPGEICIRGQQIMKGYLNDKNATKETIDEEGWLHTGDIGYIDDNDEIFIVDRVKELIKFKGFQVPPAELEAILVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNELDLTEEAVKEFIAKQVVFYKRLHKVYFIHAIPKSPSGKILRKDLRAKLENIPISNHLPLHTYCFEKLPEISHRPCLIVASTGKTYTYAETHLQCRKIAAGLSKLGIQKGDVIMILLQNSAEFVFSFLAASMIGAVATMANPFYTSSEIFKQITASKTKLIIMQAMYVDKLKQNEEKNELIDFKIITVDEPPVNCLHFSVISEANEDELPEVEFDPEDVVALPFSSGTTGLPKGVILTHKSLITGVAQQVDGENPHMYLTTEDVLLCVLPLFHIFALSTVLLCALRAGSAVLLIHKFEIGTLLGLIPKHKVTVATVVPPLVLALAKNRMVAEYDLGSIRLVLSGAAPLGKELEESLHNRIPLAVLGQGYGMTEAVISMSLSFAKHPLPVNSGSCGTVVRNAELKVLDPKTGRSLGYNQPGEICIRGQQIMKGYLNDENATKTTIDEEGWLHTGDVGYIDDNDEIFIVDRVKELIKFKGFQVPPAELEAILVSHPSIADAAVVPQKDVAAGEVPIAFVVRSNGLDLTEEVVKEFIAKQLNQVKN 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00133 1064 Gene3D - 570 992 IPR042099 -
Tsu05g00133 1064 ProSitePatterns Putative AMP-binding domain signature. 743 754 IPR020845 -
Tsu05g00133 1064 PANTHER 4-COUMARATE--COA LIGASE 3 41 569 - -
Tsu05g00133 1064 PANTHER 4-COUMARATE--COA LIGASE 3 567 1059 - -
Tsu05g00133 1064 Gene3D - 33 470 IPR042099 -
Tsu05g00133 1064 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 41 569 - -
Tsu05g00133 1064 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 567 1059 - -
Tsu05g00133 1064 CDD 4CL 52 566 - -
Tsu05g00133 1064 Pfam AMP-binding enzyme 596 997 IPR000873 -
Tsu05g00133 1064 Pfam AMP-binding enzyme 71 476 IPR000873 -
Tsu05g00133 1064 CDD 4CL 575 1058 - -
Tsu05g00133 1064 SUPERFAMILY Acetyl-CoA synthetase-like 52 573 - -
Tsu05g00133 1064 Pfam AMP-binding enzyme C-terminal domain 1006 1062 IPR025110 -
Tsu05g00133 1064 Pfam AMP-binding enzyme C-terminal domain 485 560 IPR025110 -
Tsu05g00133 1064 ProSitePatterns Putative AMP-binding domain signature. 220 231 IPR020845 -
Tsu05g00133 1064 SUPERFAMILY Acetyl-CoA synthetase-like 580 1061 - -
Tsu05g00133 1064 Gene3D - 471 569 IPR045851 -
Tsu05g00133 1064 Gene3D - 993 1064 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00133 Tsu-Chr5 958969 968956 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00133 39 483 Monolignol Biosynthesis Gene Families AT1G65060 69.643 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00133 K01904 - gmx:547492 869.381