Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00132 ATGTTGTCCGTAGCTCCTTCTATTGATGCCAAACAAAATACTACTACTGCTACAGAAGTCTCAGCAGATTCTGTAGTAATtaaccaacaaaaacaaaaaccctCCGATGATTATGATTCTACTAATCATATCTTTAAATCTAAATTACCAGATATACCAATTTCTAACCACCTCCCACTTCACACTTACTGCTTTGAGAAACTCCCCGAAATCTCCGATCGTCCTTGTCTCATCGTCGCTTCCACCGGAAAAACATACACATATGCAGAAACTCATCTCCAATGTCGAAAAATCGCAGCCGGTTTATCCAAATTAGGAATCCAAAAAGGCGATGTAATCATGATTCTACTCCAAAATTCAGCTGAATTTGTTCTCTCTTTCCTTGCCGCTTCCATGATCGGTGCAGTCGCAACCACCGCTAATCCTTTCTACACCAGCGCCGAGATCTTCAAACAAATAACTGTTTCAAAGACGAAGCTGATTATCACACAAGCAATGTACGTTGATAAATTGAAGCAGAATGAGgagaaagataaattaattgatttcaAAATAATCACCGTCGACGAACCGCCGGTGAATTGTTTACATTTCTCGGTGATTTCTGAATCGAATGAAGATCAATTACCGGAAGTGGAATTCGATCCAGAAGACGCGGTGGCGCTTCCGTTTTCTTCCGGAACAACAGGATTACCTAAAGGAGTAATTCTAACGCATAAGAGCTTAACAACAAGCGTTGCTCAACAAGTCGATGGAGAGAATCCGAATCTGTATATAACAACTGAAGATGTTCTTCTTTGCGTTCTTCCATTGTTTCATATCTTTTCTCTTAACAGTGTGCTATTGTGCGCACTAAGAGCAGGGAGTGCGGTTCTGATAATGCATAAATTCGAGATCGGAACATTGCTTGGTCATATACAGAAACATAAAGTGACGGTGGCGATGGTTGTTCCGCCATTAGTTTTGGCGTTAGCGAAGAATCCTACGGTGGGGGAGTTTGATCTTAGTTCAATACGGTTGGTGCTTTCAGGAGCTGCGCCGTTAGGAAAGGAGCTTGAAGAAACGCTTCATAACCGAATTCCTCAAGCCGTTTTGGGACAGGGATACGGTATGACAGAGGCAGGCCCAGTACTCTCCATGTCTTTGGGTTTTGCAAAACATCCATTGCCAGTAAGCTCAGGTTCGTGTGGCACCGTTGTAAGAAATGCAGAGCTCAAAATTCTTGACCATGAAACTGGTCGTTCTCTTGGTTATAATCAACCTGGTGAAATTTGCATTCGTGGCCAACAAATCATGAAAGGATATTTGAATGATGAGAATGCAACAAAAACTACTATTGATGAAGAGGGTTGGCTTCACACTGGTGATGTTGGCTATATAGATGACAATGATGAGATTTTCATCGTTGACAGGGTGAAGGAACTCATCAAATTCAAAGGCTTCCAAGTGCCCCCTGCTGAACTTGAAGGCCTTCTTATAAGCCATCCATCTATTGCAGATGCAGCTGTTGTCCCGCAAAAGGATGTTGCTGCTGGTGAAGTTCCTGTTGCCTTTGTGGTAAGATCAAATGGACTTGATCTAACTGAAGAAGCTGTAAAGGAGTTTATAGCTAAACAGGTTGTGTTTTATAAGAGACTGCACAAAGTTTATTTCATTCATGCAATTCCAAAGTCTCCATCAGGAAAGATACTGAGGAAAGACCTCAGAGCAAAGTTAGAAAGTACCAACTAA 1731 0.409 MLSVAPSIDAKQNTTTATEVSADSVVINQQKQKPSDDYDSTNHIFKSKLPDIPISNHLPLHTYCFEKLPEISDRPCLIVASTGKTYTYAETHLQCRKIAAGLSKLGIQKGDVIMILLQNSAEFVLSFLAASMIGAVATTANPFYTSAEIFKQITVSKTKLIITQAMYVDKLKQNEEKDKLIDFKIITVDEPPVNCLHFSVISESNEDQLPEVEFDPEDAVALPFSSGTTGLPKGVILTHKSLTTSVAQQVDGENPNLYITTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLIMHKFEIGTLLGHIQKHKVTVAMVVPPLVLALAKNPTVGEFDLSSIRLVLSGAAPLGKELEETLHNRIPQAVLGQGYGMTEAGPVLSMSLGFAKHPLPVSSGSCGTVVRNAELKILDHETGRSLGYNQPGEICIRGQQIMKGYLNDENATKTTIDEEGWLHTGDVGYIDDNDEIFIVDRVKELIKFKGFQVPPAELEGLLISHPSIADAAVVPQKDVAAGEVPVAFVVRSNGLDLTEEAVKEFIAKQVVFYKRLHKVYFIHAIPKSPSGKILRKDLRAKLESTN 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00132 576 Gene3D - 35 472 IPR042099 -
Tsu05g00132 576 SUPERFAMILY Acetyl-CoA synthetase-like 55 574 - -
Tsu05g00132 576 Pfam AMP-binding enzyme C-terminal domain 487 562 IPR025110 -
Tsu05g00132 576 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 43 571 - -
Tsu05g00132 576 ProSitePatterns Putative AMP-binding domain signature. 222 233 IPR020845 -
Tsu05g00132 576 CDD 4CL 54 568 - -
Tsu05g00132 576 Gene3D - 473 575 IPR045851 -
Tsu05g00132 576 PANTHER 4-COUMARATE--COA LIGASE 3 43 571 - -
Tsu05g00132 576 Pfam AMP-binding enzyme 73 478 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00132 Tsu-Chr5 946249 952014 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00132 41 485 Monolignol Biosynthesis Gene Families AT1G65060 71.875 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00132 K01904 - gmx:547492 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00132 05 946249 952014 Tsu05g00132 05 946249 952014 ECH