Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00130 ATGATTCTACTCCAAAATTCAGCTGAATTTGTTCTCTCTTTCCTGGCCGCCTCCATGATCGGTGCAACAGGATTACCTAAAGGAGTGATTCTAACGCATAAGAGCTTAATAACAAGCGTTGCTCAACAAGTTGATGGAGAGAATCCACATATGTATTTAACAACAGAAGATGTTCTTCTTTGTGTTCTTccattatttcatatatttgcgTTCAGCAGTGTGTTATTGTGCGCACTGAGAGCAGGGAGTGCGGTTCTGTTAATGCATAAATTCGAGATCAGAACGTTGCTTGGTCATATACAGAAACATAAAGTGACGGTGGCGATGGTTGTTCCGCCTCTAGTGTTGGCGTTAGCGAAGAATCCTACGGTGGCGGAGTTTGATCTTAGTTCGATACGGATGGTGCGTTCAGGAGCTGCACCGTTAGGGAAGGAGCTTGAAGAAACGCTTCGAACCCCGACCACTCCAAACCACTCCAATAACGTCcctgAGGCAGGCCCAGTTCTATCCATGTGTTTGAGCTTTGCAAAGCATCCATTGTCAGTAAGCTCAGGTTCATGTGGCACCGTTGTAAGAAATGCAGAACTTAAAATTCTTGACCTTAAAATTGGTGGTTCCCTTGGTTATAATCAACCTGGTGAAATTTGCATTCGTGGCCAACAAATCATGAAAGATGACAATGATGAGATTTTCATAGTTGACAGGGTGAAGGAACTCATCAAATTCAAAGGCTTCCAAGTACCCCCTGCTGAACTTGAAGGCCTTCTTATAAGCCATCCATCTATTGCAGATGCAGCTGTCGTCCCGCAAAAAGATGTTGCTGTTGGTGAAGTTCCTGTTGCCTTTGTGGTAAGATCAAATGGACTTGATCTAACTGAAGAAACTGTAAAGGAGTTTATAGCTAAACAGTTTGTGTTTTATAAGAGACTGCACAAAGTTTATTTCATTCATGCAATTCCAAAGTCTCCATCAGGAAAGATACTCAGGAAAGACCTCATAGCAAAGTTAGAAAATACCAACTAA 1023 0.4135 MILLQNSAEFVLSFLAASMIGATGLPKGVILTHKSLITSVAQQVDGENPHMYLTTEDVLLCVLPLFHIFAFSSVLLCALRAGSAVLLMHKFEIRTLLGHIQKHKVTVAMVVPPLVLALAKNPTVAEFDLSSIRMVRSGAAPLGKELEETLRTPTTPNHSNNVPEAGPVLSMCLSFAKHPLSVSSGSCGTVVRNAELKILDLKIGGSLGYNQPGEICIRGQQIMKDDNDEIFIVDRVKELIKFKGFQVPPAELEGLLISHPSIADAAVVPQKDVAVGEVPVAFVVRSNGLDLTEETVKEFIAKQFVFYKRLHKVYFIHAIPKSPSGKILRKDLIAKLENTN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00130 340 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 224 - -
Tsu05g00130 340 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 225 334 - -
Tsu05g00130 340 Pfam AMP-binding enzyme 21 224 IPR000873 -
Tsu05g00130 340 Pfam AMP-binding enzyme C-terminal domain 251 326 IPR025110 -
Tsu05g00130 340 Gene3D - 21 237 IPR042099 -
Tsu05g00130 340 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 1 22 - -
Tsu05g00130 340 PANTHER 4-COUMARATE--COA LIGASE 3 21 224 - -
Tsu05g00130 340 SUPERFAMILY Acetyl-CoA synthetase-like 2 338 - -
Tsu05g00130 340 Gene3D - 238 339 IPR045851 -
Tsu05g00130 340 PANTHER 4-COUMARATE--COA LIGASE 3 1 22 - -
Tsu05g00130 340 PANTHER 4-COUMARATE--COA LIGASE 3 225 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00130 Tsu-Chr5 931788 935145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00130 21 303 Monolignol Biosynthesis Gene Families AT1G51680 58.280 2.04e-119 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00130 K01904 - gmx:547930 474.552