Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00123 ATGATGAGAACACCAAGCAATGATGAAAGTGGTTTGAAGAAGGGTCCATGGAGTCCAGAAGAAGATAAAATATTAGTGGATCATATTCAAAAACATGGTCATGGAAGTTGGAGAGCTCTTCCAAAGCTTGCAGGATTGAACAGATGTGGAAAGAGTTGTAGACTAAGATGGAATAATTATCTAAGGCCTGATATTAGAAGAGGAAAATTTTCTGATGAAGAAGAGCAACTTATCATCAATTTGCATTCTGTTCTTGGAAATAAgTGGGCATCTATAGCAACACATCTTCCAGGAAGGACTGATAATGAAATAAAGAATTTTTGGAACACACATTTGAAGAAAAAGCTAATGCAAATGGGGTTAGATCCAGTGACACACAGGCCAAGAACAGATCACCTAGACCTTCTTAGCAATctacaacaaataatattgaatgCTGCAAACATTGTGAGCAATTGTGACATAAATAATGCTCTAAGGCTACAATATTCTATGCTCCCACAAAGTTTGATGAATAATGTCTTGGGATTTAATAGTaatatacaaaattttaatgatGGTTCAAATATTGGTATTTCTTCTCAAATAATTCAGCCTAATTTGCAAAACTTTGAAGCTCCTCTACAACAATTTCTACCACAAGAATGTGAGTACTCTAAGAAATTTGATGAACAAATTGGTAACACAAATGTTGATTTCGCGATATCAACAAATTCGCTTCCAAAGCTGGTTTCGGTTTCGCCTCAACGTTTAGCAACGGTTAAGGTACGCGAAGAAGACATGGTGATAAATGAAAAAGAGTGCTGTAACACTTCTTCCACCAACTTTGAAACTTGGGGAGATTTCATGAATGAGGATGCAAATGATGCTTATTGGAAAGATTTCATAGAacAACAATATTCAAGCCAGCCATAG 915 0.3475 MMRTPSNDESGLKKGPWSPEEDKILVDHIQKHGHGSWRALPKLAGLNRCGKSCRLRWNNYLRPDIRRGKFSDEEEQLIINLHSVLGNKWASIATHLPGRTDNEIKNFWNTHLKKKLMQMGLDPVTHRPRTDHLDLLSNLQQIILNAANIVSNCDINNALRLQYSMLPQSLMNNVLGFNSNIQNFNDGSNIGISSQIIQPNLQNFEAPLQQFLPQECEYSKKFDEQIGNTNVDFAISTNSLPKLVSVSPQRLATVKVREEDMVINEKECCNTSSTNFETWGDFMNEDANDAYWKDFIEQQYSSQP 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00123 304 CDD SANT 69 112 IPR001005 -
Tsu05g00123 304 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu05g00123 304 Gene3D - 69 116 - -
Tsu05g00123 304 PANTHER MYB TRANSCRIPTION FACTOR 2 299 - -
Tsu05g00123 304 CDD SANT 16 61 IPR001005 -
Tsu05g00123 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu05g00123 304 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu05g00123 304 Gene3D - 11 67 - -
Tsu05g00123 304 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 299 - -
Tsu05g00123 304 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu05g00123 304 SMART sant 66 114 IPR001005 -
Tsu05g00123 304 SMART sant 13 63 IPR001005 -
Tsu05g00123 304 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu05g00123 304 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu05g00123 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00123 Tsu-Chr5 864456 867990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00123 1 297 MYB Transcription Factor Family AT5G16770 48.773 3.95e-93 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu05g00123 Myb_DNA-binding 6.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00123 K09422 - gmx:547488 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00123 05 864456 867990 Tsu05g00123 05 864456 867990 ECH