Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00121 ATGGCTGCAACCTTTGCTTCAAGATGTTCTCGTGTGGGCCGTTCTCTGTTCGGTGGATTAAACAACAGTTCCCCTGGTCTATTTACCATGTCGCATGAGATGACATGCAGCAATTATTTTTCTCAGCAACAAAGAACCTTCATACAGATGAGGACTGTTCTGAAGGTTGTGGACAATTCCGGGGCTAAAAAGGTGATGTGCATACACGCGTTGACAGGAAAGAGAGGAGCAAGATTAGGTGACATGATAAAAGCATCAGTGAAAGAAGCACATCCTAATGGAAAAGTGAAGAAGGGAGCAACTGTATTTGCCGTAGTTGTTCGTGCAGCAATGCCAAAGGGGAGGTGTGATGGCAGTGAGGTCAAGTTTGATGACAATGCTGTTGTGCTTGTTGATAAACAAGGGCAGCCTATTGGGACCAGAGTTTTCGGACCAGTTCCTCATGAGTTGAGGCAGAAGAAGCATGTCAAGATCCTTACCTTGGCTGGCCATATTGCATAG 501 0.4571 MAATFASRCSRVGRSLFGGLNNSSPGLFTMSHEMTCSNYFSQQQRTFIQMRTVLKVVDNSGAKKVMCIHALTGKRGARLGDMIKASVKEAHPNGKVKKGATVFAVVVRAAMPKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00121 166 PANTHER 50S RIBOSOMAL PROTEIN HLP, MITOCHONDRIAL-LIKE 24 166 - -
Tsu05g00121 166 ProSitePatterns Ribosomal protein L14 signature. 104 130 IPR019972 -
Tsu05g00121 166 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 24 166 IPR000218 GO:0003735|GO:0005840|GO:0006412
Tsu05g00121 166 Pfam Ribosomal protein L14p/L23e 48 165 IPR000218 GO:0003735|GO:0005840|GO:0006412
Tsu05g00121 166 SUPERFAMILY Ribosomal protein L14 48 165 IPR036853 GO:0003735|GO:0005840|GO:0006412
Tsu05g00121 166 SMART Ribosomal_L14_2 47 166 IPR000218 GO:0003735|GO:0005840|GO:0006412
Tsu05g00121 166 TIGRFAM rplN_bact: ribosomal protein uL14 48 165 IPR005745 GO:0003735|GO:0006412|GO:0015934
Tsu05g00121 166 Gene3D Ribosomal protein L14 47 166 IPR036853 GO:0003735|GO:0005840|GO:0006412
Tsu05g00121 166 Hamap 50S ribosomal protein L14 [rplN]. 47 166 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00121 Tsu-Chr5 845135 847384 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00121 58 149 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 36.364 1.38e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00121 K02874 - gmx:100818301 298.516