Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00116 ATGATTCAGAACAGTGATATGAGGCTTGAATCAGGGACTTGTAATGTGTGCTCAGCTCCTTGTTCATCTTGCATGCATCTTAACCATGCTCTCACGGGGTCAAAGGCTGAAGAGTTTTCTGATGAAAACTGTCGCTCAGGGGAGGCTAATGGTCAGAATTCTATGATTGAGGGTAATGTACACTCTCTTAATAGCAGAGCTTGTGAAAACTTGCAGCAGGCTGTCAGCGAAACAAGTAATATGCTCAGTGTTAATTCAAGTCATGATTCTCTATCGGAAAATGCTGAGAGTAAGCAGATCTTGTTGAATAAGACTCAGGATCCCAACCATTTAGAAGGTCATGATGACAACACATCCTGTATTAGTAGAGCATCCGATGCTAATTTAGTGATTGATAGCCATCTAAGGAATGCAGACATAACAAATATACCTCGAAATGGTAAATCTCTCTCAGATACTCGAAGCTCTATTGAGAATTGCAGTTCATCATTAACCAAAGAGAGTCAACCTGTTGTTTCTGGTGACAAATATGCTGCCAATAAGGATAACCTTATTGAAGGCACTTCCAATGTTTCACTAAAAGTATGTCCAAAGTCACAAGCAGATCCTGATAATGATGTACGTAATGCTAACGTTGAAGACTGCAAATGTACGGCCCATGATGGACATCATGAGAAAGCTGAAGAACCGGTGAAATCACCTGGCAAACAGGAATCTCAATCTGAAAATGAGAGTGATGAATCAGATGTTGTGGAACATGATGTGAAGGTGTGTGACATCTGTGGAGATGCTGGTCGTGAGGATCTACTTGCCATATGTTGTAGGTGCACTGATGGTGCAGAGCACACCTACTGCATGCGAGAAATGCTTGAAAAACTCCCTGAAGGGGATTGGTTCTGTGAAGAATGCCAAGATGCAGTGGAAGCTGAAAACAAGAGGCTGGatgttgaagaaaaaaaaatcatcaaaactaCTTCCACGTCACAAGTTTCTGGCAAAAGAGTTCATGACAATGTTGAAGTGGCTCCTCCAGCAGCAAAAAGGCAAGCTCTTGAATTAAGCAAAGGATCACCAAAGGTGTCAAGCCCCAGGAGATTGGTGCCACTATCACGAGAATCTTCATTTAAGAGCTCAGATAAATTAAAAGGGAAGTCTGGTCTTCTGATGCCTCCTCGTAACCACTCTGGTGGTGATGACACACAGACTACTCGATCTCCTTCCGTTGGCCCCCGGGGTCAAATTTCAAAAAGTATGTTATTGAAGTCTAATTCATCCAACAACTTAAGTTCCAAGCCGAGAGTCAAAATTGTCGATGAAGTTTTTCCACCAAGACCAAAAGGGGGTAATGAACAAACTTCTAAGAATATGGAGATACCTGGTCGGATGACAAGCAAATCGACATTATTCAAATCCTCTAGTTTGGGCCGATCAAGTGCAATTgaatcaaaagttaaaatgattTCACCTAAATCTACAACTACTCAGGACTTGAAAGGGTCTCGACATTTCAAAGAATCAGGTGTTTTTGACCGAAAATATTTGTCTAGGAATGACCGGCCTGTGGCTAGTTCTGTTGTTTCCACACCTAAGGGTGATCAGAAGCTTACACCTCGGGCTGAAACCATTTTTAAACCGTCATCCATTAATAATCGGGAGGTGAAGATTAACCAGGATGGAAAATTAAGCGCGTCATCAAAATCAATGAACAATATAAGCCGTAAAAGTTTGGAGCCTCAAGGTTGTTCAGAGAGAACGTCCGCCAGTAATGATGAAGCTCTACAGGATGCGCTGCCTCGATCACGAGAGACAGGAAATCAGGGTGAGAAATCCAGAGAGAGTCTTGGTGATCGTGTAAGGCCAGTTGTTCCCACTGCATCAAAAAGTCCATTTTGTCAAAAATGTGAGGAATTTGGCCATTCTTTAGAATATTGCACCGCTGGCACTCTACCAGAATCTGGTGCAGAAATATCCGTCACTGCCGCAAATATCTCAAAAGAGGAAACACATAAAGGCAATAGATTGAAAGCTGCAATCCAGGCTGCTTTACTTAAAAAGCCTGTGATTTACAGGAAGAAAGAAGTATCCAATCAAACTGATGAAATTTCTACATCAGGCACAGAGTTGAATTGTGAAGTGACTGCACAAGACCCAGTCTTGGTTTCTAGCACACTTAAGAATAGAATTACTACCGTAGAAACTCATGAACAACAAAAAGTCCTTGAGAATTCTACATCTGCCAGCGATTTGAAGCAACTTAATTCTTGTTCAACTGGTGTTTGTTCCCAACAAGGAAAGTCGGATTTAGTCGGTCTTAATGCTCAAAAACCTTTAGTGAGAGACTTGTCTACAAATGCTGTGGAAATCTCAAGTGTTCTATCGAAGATGTTGGCCTTTCCTGAATTCGATTACATCTGGCAGGGTGTCTTTGAAGTGCATAGAAACAGAAAGCCTCCAGAGTTATGTACGGGAGTTCAGGCACATTTATCCTCTTCTGCATCTCCTAAGGTACATGAGGTAGTGACCAAGTTTAGTTCCAAAGTTTCCCTCAATGAAGTTTCGCGCTTGAGCACATGGCCATCACAGTTTCATCACGGTGGTGCTAGAGTAGATAATATTGCTCTTTACTTCTTTGCGAGAGATCTTGAGAGCTATGAGAGACACTACAGGGGTCTATTGGATCACATGATTAGAAATGATTTAGCACTTAAAGGAGTTTTTGATGGTGTTGAACTTCTCATATTCCCATCCAATCAGCTTCCGGAAAATTCACAGCGCTGGAATATGTTGCTTTTCTTATGGGGTGTATTTAGGGGGCAGAGGACCAATCATTCAGGTTCTGCAAAAAAGATATGTACTCCAAGTTTGAATGCAATGCCAGTTGAGGTGAATTCTTCAACTGCTGTTGTGACTTTGTCTGAACGTTGTTTGTCGAAGGGCATCGATGAAAAATCAATGAATTCCGACAAAGCATGCAACCAATTATGTCAACAAACGAAATCCACTGGTTCATCCCTGAAAGCTAGTGTACTAGAGGGTGAACGATACAGAGAGACCAAACCTCCTGAAGAAATGGGAACAGGTGCAAGTAACAAGATGGTGGAAACAAATACTGATTCTGCTATTTCTGGCAAGCAAGAGAATACCCTCTGTTTGGAGATTCCTTCTGTTAGCAATCAAGAAAGCGATGCTGCCTACAATATTAGTAAGAATGAAATTTTGGAGAGAATGAACTGTGATGAAGATCAGCAAAGGACTAAGCGGAAACAGAAAGAAGACAGTCAGTATATTGATTTGGAGAAAACTATTGACAATCATGAATCACATGCTGCAAGCTATATTGGTATGGATAAAACTTCAGAGAGAATGAACATTGATCAAGGTCAGCAGAGGAAACAGAGAGATGGTAACTATATTGACTTGGAGGCAACTGTTGAAAATCAAGGACCAGCTGCTACAATCAATATAACTGAGGATAACATTCCAGAGAAAatagaagatgatgaagatcgGCAACGGCTTAAGAGGAAAGGCAAAGAAGATTATCACTATATTGACTTGGAGGCACCTCTTCAGGAAGACCTGTCCGCAGAAGGTGTCGAGTATCAGCTACCCAATGATAAAGAAGTTCATCATGTTGACTTATCAGTAGTTGGTTGTCAGAAAATGCCTTGGAATGAGGTTGAGGTAAATGGAAAATTAGAAGATGGAGAAAGTTCCAGAAAGAAGCTAAGGACAAGTTTTGGCGGGATTTATGGACATTACAGTTCTGGAGGTAGAGACTCCTTTAATGACAGTTTGTCATCTCTTGGAAATGATCTTGGTTCTCGTTCTTCAGTTGAGGACAAAGGATGTGAAGAAGCTTCCAATGAAAAAATCATCTGCGAGGACTTGGGGAAGACGGAAATAACCTTCTTTCCTGTTGATTCTCAGAATATCAATGGCTCGCAATTGGGGCTAAATGCCATGCCATTGAAAGGGATTCATGAGCGTGTGGATGTGATTCCAAATCTAAATCTTGCTTTAGGGGATGAAACAGAACTGCTGCCATCCCCTCCTCCTCCTGCTGCTCCTAAGGGTATGCTGCCTCCTTTCCTAGTTGGGGCAGTAGACAAGAAAGATAACCGTCCAGATAGTTTGGCAGATGGGCTAGAGGACGATGCTGCCGCTGCATCTCTTTCCCTTTCTCTATCATTTCCATCTTCAAGCCAGGAACACACAAAAGATTCTTCAACGACAGAGCTTTTGCCTGATGGGCACCGTGCAAATCCATCGTTTCTCCTTTTTGGGAGATACACAGACAAATAA 4305 0.4137 MIQNSDMRLESGTCNVCSAPCSSCMHLNHALTGSKAEEFSDENCRSGEANGQNSMIEGNVHSLNSRACENLQQAVSETSNMLSVNSSHDSLSENAESKQILLNKTQDPNHLEGHDDNTSCISRASDANLVIDSHLRNADITNIPRNGKSLSDTRSSIENCSSSLTKESQPVVSGDKYAANKDNLIEGTSNVSLKVCPKSQADPDNDVRNANVEDCKCTAHDGHHEKAEEPVKSPGKQESQSENESDESDVVEHDVKVCDICGDAGREDLLAICCRCTDGAEHTYCMREMLEKLPEGDWFCEECQDAVEAENKRLDVEEKKIIKTTSTSQVSGKRVHDNVEVAPPAAKRQALELSKGSPKVSSPRRLVPLSRESSFKSSDKLKGKSGLLMPPRNHSGGDDTQTTRSPSVGPRGQISKSMLLKSNSSNNLSSKPRVKIVDEVFPPRPKGGNEQTSKNMEIPGRMTSKSTLFKSSSLGRSSAIESKVKMISPKSTTTQDLKGSRHFKESGVFDRKYLSRNDRPVASSVVSTPKGDQKLTPRAETIFKPSSINNREVKINQDGKLSASSKSMNNISRKSLEPQGCSERTSASNDEALQDALPRSRETGNQGEKSRESLGDRVRPVVPTASKSPFCQKCEEFGHSLEYCTAGTLPESGAEISVTAANISKEETHKGNRLKAAIQAALLKKPVIYRKKEVSNQTDEISTSGTELNCEVTAQDPVLVSSTLKNRITTVETHEQQKVLENSTSASDLKQLNSCSTGVCSQQGKSDLVGLNAQKPLVRDLSTNAVEISSVLSKMLAFPEFDYIWQGVFEVHRNRKPPELCTGVQAHLSSSASPKVHEVVTKFSSKVSLNEVSRLSTWPSQFHHGGARVDNIALYFFARDLESYERHYRGLLDHMIRNDLALKGVFDGVELLIFPSNQLPENSQRWNMLLFLWGVFRGQRTNHSGSAKKICTPSLNAMPVEVNSSTAVVTLSERCLSKGIDEKSMNSDKACNQLCQQTKSTGSSLKASVLEGERYRETKPPEEMGTGASNKMVETNTDSAISGKQENTLCLEIPSVSNQESDAAYNISKNEILERMNCDEDQQRTKRKQKEDSQYIDLEKTIDNHESHAASYIGMDKTSERMNIDQGQQRKQRDGNYIDLEATVENQGPAATINITEDNIPEKIEDDEDRQRLKRKGKEDYHYIDLEAPLQEDLSAEGVEYQLPNDKEVHHVDLSVVGCQKMPWNEVEVNGKLEDGESSRKKLRTSFGGIYGHYSSGGRDSFNDSLSSLGNDLGSRSSVEDKGCEEASNEKIICEDLGKTEITFFPVDSQNINGSQLGLNAMPLKGIHERVDVIPNLNLALGDETELLPSPPPPAAPKGMLPPFLVGAVDKKDNRPDSLADGLEDDAAAASLSLSLSFPSSSQEHTKDSSTTELLPDGHRANPSFLLFGRYTDK 1434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00116 1434 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 994 1424 - -
Tsu05g00116 1434 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 7 994 - -
Tsu05g00116 1434 MobiDBLite consensus disorder prediction 395 431 - -
Tsu05g00116 1434 MobiDBLite consensus disorder prediction 1394 1434 - -
Tsu05g00116 1434 MobiDBLite consensus disorder prediction 1394 1409 - -
Tsu05g00116 1434 MobiDBLite consensus disorder prediction 514 622 - -
Tsu05g00116 1434 MobiDBLite consensus disorder prediction 221 243 - -
Tsu05g00116 1434 MobiDBLite consensus disorder prediction 602 616 - -
Tsu05g00116 1434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 318 IPR013083 -
Tsu05g00116 1434 PANTHER - 7 994 - -
Tsu05g00116 1434 PANTHER - 994 1424 - -
Tsu05g00116 1434 SUPERFAMILY FYVE/PHD zinc finger 244 306 IPR011011 -
Tsu05g00116 1434 MobiDBLite consensus disorder prediction 221 250 - -
Tsu05g00116 1434 MobiDBLite consensus disorder prediction 540 601 - -
Tsu05g00116 1434 MobiDBLite consensus disorder prediction 327 431 - -
Tsu05g00116 1434 Coils Coil 300 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00116 Tsu-Chr5 815404 825640 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00116 254 341 C2H2 Transcription Factor Family AT3G01460 28.409 3.69e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00116 - - gmx:100806639 1597.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00116 05 815404 825640 Tsu05g00116 05 815404 825640 ECH