Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00090 ATGGATTTTGAAGGTGAAGGTCTTATTAGGACACCAAAGAGGGAAATGGAAGGAGAAGGAGGTGTGAGTTCAAAGATGAAGGGTTCTGGAAACCAAAGTAGCAAAGATATGATTTTCAGAGCTGATAAGATTGATCTCAAGAGTTTGGATGCTCAATTGGAAAAGCACTTAAGTAAGGTTTGGTCAAGAAGTGCCACCTTCAATGAGTCGAAAAGGCCTAGAGAAGAGTGGGAGATTGATTTGGCCAAATTGGATTTAAGGTATATTGTTGCTCATGGTGCTTATGGTATTGTCTATAGAGGCACATATGATACCCAAGATGTTGCAGTGAAAGTGTTGGATTGGGGTGAGGATGGTGTTGCCACTGCTGCGGAGACTGCTGCATTACGCGCATCTTTTAAGCAGGAGGTTGCTGTCTGGCACAAACTCGACCATCCAAATGTCACCAAATTTGTTGGAGCTTCAATGGGAACTTCGAATCTTAAGATTCCTTCGAAAAACTCTCCAGCCGACAATGAAGAAACACTTCCTTCTAGGGCATGTTGTGTTATTGTCGAGTTTCTTCCTGGTGGAACACTGAAACAATACTTAATCAGAAATAGGCGGAAGAAACTTGCTTATAGGGTTGTGGTTCAGCTTGCTTTGGACCTCGCTAGAGGTCTTAGCTATCTACATTCGAAGAAGATTGTTCACCGTGATGTTAAGACGGAGAATATGTTGCTAGATGGTAGCCGGAATCTAAAGATAGCTGATTTTGGAGTTGCTCGTGTTGAAGCTTTGAATCCAAGTGACATGACCGGTGAAACTGGAACCCTTGGATATATGGCTCCTGAGGTTTTGGATGGAAAACCTTACAACAGGACATGTGATGTCTATAGCTTTGGCATTTGCTTGTGGGAAGTTTATTGCTGTGATATGCCCTATCCAGATCTAAGCTTTGCTGACGTGTCTTCTGCTGTCGTTCGTCAGAATTTACGCCCGGATATTCCAAGGTGTTGTCCGAGTGCATTGGCGAACATCATGAAGAAATGCTGGGATGCGAATCCGAGCAAACGTCCGGAAATGAGCGACGTGGTGAGAATGCTAGAAGTGCTGGATACAAGCAAAGGTGGTGGAATGATACCTGAGGATCAGAGTTCAGgttgcttttgtttttcaccAGCTCGAGGTCCTTAA 1176 0.4328 MDFEGEGLIRTPKREMEGEGGVSSKMKGSGNQSSKDMIFRADKIDLKSLDAQLEKHLSKVWSRSATFNESKRPREEWEIDLAKLDLRYIVAHGAYGIVYRGTYDTQDVAVKVLDWGEDGVATAAETAALRASFKQEVAVWHKLDHPNVTKFVGASMGTSNLKIPSKNSPADNEETLPSRACCVIVEFLPGGTLKQYLIRNRRKKLAYRVVVQLALDLARGLSYLHSKKIVHRDVKTENMLLDGSRNLKIADFGVARVEALNPSDMTGETGTLGYMAPEVLDGKPYNRTCDVYSFGICLWEVYCCDMPYPDLSFADVSSAVVRQNLRPDIPRCCPSALANIMKKCWDANPSKRPEMSDVVRMLEVLDTSKGGGMIPEDQSSGCFCFSPARGP 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00090 391 PRINTS Tyrosine kinase catalytic domain signature 185 198 IPR001245 GO:0004672|GO:0006468
Tsu05g00090 391 PRINTS Tyrosine kinase catalytic domain signature 223 241 IPR001245 GO:0004672|GO:0006468
Tsu05g00090 391 PRINTS Tyrosine kinase catalytic domain signature 289 311 IPR001245 GO:0004672|GO:0006468
Tsu05g00090 391 PRINTS Tyrosine kinase catalytic domain signature 333 355 IPR001245 GO:0004672|GO:0006468
Tsu05g00090 391 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 11 385 - -
Tsu05g00090 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Tsu05g00090 391 CDD STKc_MAP3K-like 90 362 - -
Tsu05g00090 391 Gene3D Phosphorylase Kinase; domain 1 73 166 - -
Tsu05g00090 391 ProSiteProfiles Protein kinase domain profile. 84 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00090 391 Pfam Protein tyrosine and serine/threonine kinase 89 362 IPR001245 GO:0004672|GO:0006468
Tsu05g00090 391 Gene3D Transferase(Phosphotransferase) domain 1 190 374 - -
Tsu05g00090 391 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 11 385 - -
Tsu05g00090 391 SUPERFAMILY Protein kinase-like (PK-like) 59 363 IPR011009 -
Tsu05g00090 391 MobiDBLite consensus disorder prediction 1 21 - -
Tsu05g00090 391 SMART serkin_6 84 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00090 391 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00090 Tsu-Chr5 639736 643833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00090 30 391 MAP Kinase Kinase Kinase AT3G22750 80.387 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Tsu05g00090 PK_Tyr_Ser-Thr 4e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00090 - - mtr:MTR_5g006560 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04549 01 53050672 53053353 Tsu05g00090 05 639736 643833 PCT