Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00088 ATGGATATGGATACACCAGAGAGGAACCAGATCAACACTACTCTCTCTAAGTTCGAGGATTCACCAGTATTCAACTATATCAACAATTTATCTCCTATAAAGCCAGTTAAATCTGCTCACATTACTCAAACTTTCAATTCACTTACCTTTTCATCTCCTCCGTCTGTTTTCACATCACCACATGTAGCCTCTCTCAAGGAGTCGAGATTCCTACGCCTACATAGCCTACCGAGCGCATCAAAGCCTAAGGATTCATCTGAAGATGTAAATAAAGTGTACTCAAATGAAGTGGCTCTTGCAGATTCCAGTCTTTCACAGCATAACTCATGTGAATTACATGAAAGTGCTGGTAAAGGGATATCGGTAGGAGATGATACTGTTGAGCTATCGAACAAACAGACAAAGTTCTCAGATGAGCTACCGCAGGCCTTACAGTACAATTGTGGTAGTCCTGGTTATGGTCCTACGCTATGTGGTGATGAGGCTAACTCTCTTTTGGAATTGTCTGGTGAAGCTGTATCGGATGTTGCTTATGTTCGGGAAAATTGTAAAACAGATTCGGTTGAGGCTGAATTGCATCTTCAAGGAACAAGTCATATTGATCCAAAGGGTGAAGGCTCAGACTGTGATTGGGAGGGTTTAATACACAATGCTGCTGCTAATGATGTGTTAATTGATGCAGAAGCTTTCAAGGGCTTAGCGTTTAAGGGTCTAATGCAATGCTCTTCTATGAGACTTAGCGATTTTGTGCCCCTGCTACAACAATCTACCAGCCATCATGACCAGAAAATACACATGGTCGATTCAGTTGCTTCTGGTTCTgaacatgaaattgaaaatcattgtTCTGAGCTAGTTGCCGTGACGGACACTGACCCCACACAAGACAGTCTTGCTAATGGTTCGTTGATGACTAACAACCCAAATGAGAAAATGGATAATGAGCTTGTTTCTGTCACGCACCGTGGTATCCGGAGGCGCTGTCTTGACTTTGAGATGGCCAGTGTGCGAAAGAAGATCTCAGATGATAATTCAAACACCGGCTCTAGTACAACACAGTCTGAAGTAAGAAATGCTGTTAATGAAAACCAACTGCTCCCAGCAAAACGCAATGCTGATTCACAAAGGTGCATTTTGCCGGGTATCGGTTTACACCTTAATGCACTTGCTACTGTAAAGGATCACAAAGGCAAGCAAAGCGAAAATGCGACTTCTGAAAGACAACTCAGTCTGGCCAACTCTACTTCCTTGCTACTCTCTGCATGCCAAGATCATCAGCATCTATCGGTCGTATCTGTATCAGTATCCTCTGAAAGAGAATTAGACCCAACATCAGACAATGGGGTTCAGCCTGCTGAAGATTGTTCCCAGGCACTAGCTTACATGGCTGCTGAGGATTTCAATCAGAATAGCCCCAAAAAGAAAAGGCGTAAGTCAGAGCCAGTTGGTGAAATTGAGGGCTGCAAACGTTGTAATTGCAAGAAATCAAAGTGCCTGAAGCTTTATTGCGAGTGTTTTGCTGCTGGTGTTTACTGCATAGAGCCCTGCTCCTGTCAGGAATGCTTCAACAAACCTATTCATGAAGATACTGTTCTTCAAACTCGCAAACAGATTGAATCTCGCAACCCTCTTGCATTTGCTCCTAAAGTCATCCGAAGTGCAGACTCCGTGCCTGATGTTGGGATTGACCCAAACAAAACTCCAGCTTCAGCACGCCATAAAAGAGGGTGCAACTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGCTATCAGGGTGGTGTTGGTTGCTCCATTAGCTGCAGATGTGAAGGGTGCAAAAACGCATTCGGCAGAAAGGATGGTTCTGCTTCAATAGGGATAGAAGGCGAGACAGAAGAAGAAACTGAAACAAGTGACAAGGGTGTGGAGGAAAAGGCTATTCAGAAAACTGAGATTCAAAATATTGAAGATCATCAAGAGTCTTCTTTGGTCTCAACACCATTACGGCTTTCCAGGCCATTGCTTCCGATGCCCTTTTCATCAAAGGGAAAACCACCAAGATCTTTTGTTACAACCATCACTAGTTCTGGATATTTTGCCAGCCAAAAGCTTGCAATGCCAAATTCTCTTTGGTCTCAATCTAAGCCTTTTCAGACTGTTCCAGACGATGAAATGCCAGAGATTCTCCGTGGTGATAGCTCTCCTATTGCATGTATCAAAACATTATCCCCAAATGGCAAGAGGATCTCTTCTCCTAACTGTGAAAGGGGATCATCTCCTGCTCGCAGAGGCGGAAGGAAGTTGATATTACAATCTATTCCTTCATTTCCTTCTCTCACCCCTCACCCTTAG 2337 0.4322 MDMDTPERNQINTTLSKFEDSPVFNYINNLSPIKPVKSAHITQTFNSLTFSSPPSVFTSPHVASLKESRFLRLHSLPSASKPKDSSEDVNKVYSNEVALADSSLSQHNSCELHESAGKGISVGDDTVELSNKQTKFSDELPQALQYNCGSPGYGPTLCGDEANSLLELSGEAVSDVAYVRENCKTDSVEAELHLQGTSHIDPKGEGSDCDWEGLIHNAAANDVLIDAEAFKGLAFKGLMQCSSMRLSDFVPLLQQSTSHHDQKIHMVDSVASGSEHEIENHCSELVAVTDTDPTQDSLANGSLMTNNPNEKMDNELVSVTHRGIRRRCLDFEMASVRKKISDDNSNTGSSTTQSEVRNAVNENQLLPAKRNADSQRCILPGIGLHLNALATVKDHKGKQSENATSERQLSLANSTSLLLSACQDHQHLSVVSVSVSSERELDPTSDNGVQPAEDCSQALAYMAAEDFNQNSPKKKRRKSEPVGEIEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRSADSVPDVGIDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSASIGIEGETEEETETSDKGVEEKAIQKTEIQNIEDHQESSLVSTPLRLSRPLLPMPFSSKGKPPRSFVTTITSSGYFASQKLAMPNSLWSQSKPFQTVPDDEMPEILRGDSSPIACIKTLSPNGKRISSPNCERGSSPARRGGRKLILQSIPSFPSLTPHP 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00088 778 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 3 777 - -
Tsu05g00088 778 MobiDBLite consensus disorder prediction 737 778 - -
Tsu05g00088 778 MobiDBLite consensus disorder prediction 737 752 - -
Tsu05g00088 778 SMART CXC_2 486 527 IPR033467 -
Tsu05g00088 778 SMART CXC_2 572 613 IPR033467 -
Tsu05g00088 778 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 575 610 IPR005172 -
Tsu05g00088 778 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 489 524 IPR005172 -
Tsu05g00088 778 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 3 777 IPR044522 GO:0003700
Tsu05g00088 778 ProSiteProfiles CRC domain profile. 487 612 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00088 Tsu-Chr5 620949 625845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00088 3 777 CPP Transcription Factor Family AT3G22780 42.145 5.48e-158 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Tsu05g00088 TCR 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00088 - - mtr:MTR_5g006530 1249.96