Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00078 ATGGGGAAAAACAAGAGACGAGACAGTGATCCCATTGCTTTAAATCTCCCACCAGTAGCCGCTGATCAAACCGGCGAAGGATTACCATACGCACCGATTAACTTTCCCGACCAAGGCGATGTTTGGGGTTGGAAAACCGGTAAAAGACTTCAATCCAACGGTTGTTTTCAAGATCGGTATCTTTACTCACCGGTTCGATTCAAACCTGGATCCAATCGTAAACATCGACACACTTTCGCTAGTAAACTCTCTGTTGAACGCTACATCAAGTCCACTTTTCCCGATGCCGATATTGATAAGTTTTTCTCTTCGTTTACATGGAGAATCCCCGCAGCTGAAGCTTCTaacaatgGAGACAATGTGATGCCGATATCTGCTGTACCTCTACATGCTGTACCTCTTCAACAGATACCAGAGGTAGTGGAACCGGACTATGACGACAGTAGTAAGATTGGTGTTGTTTGGTGCAAAGCTAGGAATAAAATGTGCGACAGCCTGAAGTTTAATGTAATGGAAAAGTATTTACCGGCCATGCCTTGCGATGTATGTTGCTTTGAGTCAGAGTTTTGCCGCGATTGCTCCTGCGTACTCTGCAGCAAAACTGTTAGTTTTGATCACGGCGGCTACAGTTATATCAAGTGCGTAGTAAATGCTGGTGATGGAATATGTGGTCATGTTGCCCATTTGGAATGCGCACTTCGATCTCAATTGGCTGGCACGGTTGCAAAAAACATTGGATTAGATGTGGAATATCATTGTCGGCGATGTGATGGGAGGACAAATCTTCTTTCCCATGTTGAAAGACTTTTTCAATCATGTAAATCTACTGATTTAGATGATGAAATCAAGAAGAAGATTTTGGACCTTGGTGCTTGTCTCTTGCGCGGTTCAAAGACACCCGTTGCGAAGGAGCTGCTGAATTGTGTTGAATTGGCCATTTCAAAGCTCAAATGTGTGGCCAATAATGAAGATATCAAGAAGGGGGGTGACAATCTTATGGCTCATTCTGAAGGCTTACCAGATCATGGCACTGATCCAATGGAAGTAACAATGAATGGAAGCCCTTCACATGTTAGATTAAGGGAGGAATCTAATGATTATCATTCACAAATATTGAATCTTGAGGCTGAGGTGGGTGACATGCTGGAGGCTCTTAGAAAGTCGCAAGAGCTTGAATATAAGGTGGCGGAAGAAAGGGTCCGTGAACAAAAGAACTATATTGAGAATTTATATCAGCGACTACAATGTGAAGTGGCTGAACTAGAACGCCCTAACTTAACTCATTCAGAGCCCTTGTTCCGTGCTATCAGGGAAAGGAAGGAACAAATCAAGCGAGAAATGGAGAAATTCAAAGAGATGAAAATGGTGGCAAGTGGTTTCGGTAGGATTTCAAGAGATGTTTTAAGGGAACACTTTGCTTACAAATAA 1428 0.4279 MGKNKRRDSDPIALNLPPVAADQTGEGLPYAPINFPDQGDVWGWKTGKRLQSNGCFQDRYLYSPVRFKPGSNRKHRHTFASKLSVERYIKSTFPDADIDKFFSSFTWRIPAAEASNNGDNVMPISAVPLHAVPLQQIPEVVEPDYDDSSKIGVVWCKARNKMCDSLKFNVMEKYLPAMPCDVCCFESEFCRDCSCVLCSKTVSFDHGGYSYIKCVVNAGDGICGHVAHLECALRSQLAGTVAKNIGLDVEYHCRRCDGRTNLLSHVERLFQSCKSTDLDDEIKKKILDLGACLLRGSKTPVAKELLNCVELAISKLKCVANNEDIKKGGDNLMAHSEGLPDHGTDPMEVTMNGSPSHVRLREESNDYHSQILNLEAEVGDMLEALRKSQELEYKVAEERVREQKNYIENLYQRLQCEVAELERPNLTHSEPLFRAIRERKEQIKREMEKFKEMKMVASGFGRISRDVLREHFAYK 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00078 475 Coils Coil 433 453 - -
Tsu05g00078 475 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 10 473 - -
Tsu05g00078 475 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 10 473 - -
Tsu05g00078 475 Coils Coil 393 413 - -
Tsu05g00078 475 Pfam PHD - plant homeodomain finger protein 158 286 IPR032881 -
Tsu05g00078 475 Coils Coil 357 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00078 Tsu-Chr5 575193 577796 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00078 177 317 PHD Gene Family AT5G57380 31.206 5.44e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00078 - - gmx:100811562 508.834