Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00066 ATGGTTTGCAAAAATTCCACAAAAAACATTGTTTGCAAATTCTACCCTCTCCCTAATGGTCTTTTCCCACTAGGAATATGGTCTGCAAAAATTCCACAAAAAACATTGGTATGGTACAAAAGTCTTTCAGTTGAACCAAATTCCTTACTCCAACTCACTTCTGAAGGACACCTTGTGATAACACATCCCAATGGAACCATTTCTCAAACCATAGATAACATTGGAGGAGATAGTGAAGCTGCAAATTCTGCTCATATGCAAGATGATGGAAATTTTGTGTTGAAAGACTCCAATCTAAGAACTTTGTGGGAGAGTTTTGATTCTCCGCCTAACACGATGTTACCTGGACAAACCTTGAAAAGCAATCAAATCCTCTATTCTAAAGGGAAAGGTGCTTCAAACTATTCATTGGGAAATTTCATGCTTGAAATGCAGGGTGATGGTAACTTAATCCTCAAGGCACACCAATTTTCAGACCCTTCTTATTGGTACACTTCAACTTTAGTCtcaaatttgaatttagtttttaatgaatctaattCCTTGTTGTATCTTGCAAATGGAAATGGAAACATTGTTTACTCTTTAACAAAAGGTACTCCAACTCCGGTAAAAGATTACTATCATCGCGCTACAattgatgaaaatggaaattTTCAACAATATGTTTATCACAAAAGAAATGGAACTAAATGGGAAAGGGTTTGGAGAGCTATAGATGATCCATGTAAAGTAGATTTTGTTTGTGGAATTTATGGTTTATGTACTTCTCCTAATAATGAATCAGTGAAATGTGATTGTATTCAAGGTTATATTCCATTTGATCAAGAAGATGTGTCTAAAAGGTGTCATCCAGAAACTGTAATCAATTATTGTAGTGGACCTAATGTGATGAATCTTAAGCAAAATGTGTTTGATGATactgattttcaattttatcctgATTTTGCTCTAATCAATGATGTTGATTTGGAAAGTTGTAAGAAATCTGTAATGGATGATTGTAATATCATTGCTGCTACTTATAattcttcaacttcaacatgTGTTATGAAGAGAATGCCATTGCTGAATGCAAGAAACAGTTCATCTTCTAAAGGACAGAAAGCACTTCTTAAAGTTATGGTTGCAATTAGTGCAACTCTTGCATGCTTCTTTGGAGCTCTTGCAGCATATTATCATCCTTATGCAAAAAGACTAACAAGAAGGAGAAAGTTTCTGAATGCAACAGATATTGGAATCAACTTCAGAGAATTCACATTCGACGAATTGCATGAAGCAACAGATGGGTTTAGTAGGATTCTTGGCAAGGGATCTTCAGGGAAAGTCTACCGCGGTACATTGATTATCGACGATGCGGAAATTGGTATTGCAGTTAAGAAGCTAGAAAAGAAGATTGAGAAAAGTGAGAATGAGTTCATGACTGAGCTTAAAATTATAGGACTTACACATCACAAAAATTTGGTAAAACTTTTGGGATTTTGCATGGAGAATAAGCATAGAGTACTTGTCTATGAGTTAATGCCAAATGGAGCATTGTCAAGTTTATTGTTTGGacaaaaaggagagaaacctcaATGGAGTCAAAGAGTTGAAATGGCTCTTGGAATAGCAAGAGACTTACTTTACTTGCATATAATTGATGTCAATGATCCGCATATAATTGATATTGCCAATTTCGCTGTCACCGTGTACAGCAAACATACTATTACTATATGTCAATCAAAGTTAAAGCTTGATAAGATAATTAAGGGTGAATCCCAAGAATTGGCCGGAGGGATTAACTACCACCTCATCCTTTCTGCCTCTCGACGTCTTCAAGGTACTTACAATTATGAAGCAGTTGTGTTAGAAAAGCCATCCGAACACTTCAGGAACCTCACTTCTTTTAAACTAGTTCAcccttaa 1908 0.3391 MVCKNSTKNIVCKFYPLPNGLFPLGIWSAKIPQKTLVWYKSLSVEPNSLLQLTSEGHLVITHPNGTISQTIDNIGGDSEAANSAHMQDDGNFVLKDSNLRTLWESFDSPPNTMLPGQTLKSNQILYSKGKGASNYSLGNFMLEMQGDGNLILKAHQFSDPSYWYTSTLVSNLNLVFNESNSLLYLANGNGNIVYSLTKGTPTPVKDYYHRATIDENGNFQQYVYHKRNGTKWERVWRAIDDPCKVDFVCGIYGLCTSPNNESVKCDCIQGYIPFDQEDVSKRCHPETVINYCSGPNVMNLKQNVFDDTDFQFYPDFALINDVDLESCKKSVMDDCNIIAATYNSSTSTCVMKRMPLLNARNSSSSKGQKALLKVMVAISATLACFFGALAAYYHPYAKRLTRRRKFLNATDIGINFREFTFDELHEATDGFSRILGKGSSGKVYRGTLIIDDAEIGIAVKKLEKKIEKSENEFMTELKIIGLTHHKNLVKLLGFCMENKHRVLVYELMPNGALSSLLFGQKGEKPQWSQRVEMALGIARDLLYLHIIDVNDPHIIDIANFAVTVYSKHTITICQSKLKLDKIIKGESQELAGGINYHLILSASRRLQGTYNYEAVVLEKPSEHFRNLTSFKLVHP 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00066 635 Gene3D Phosphorylase Kinase; domain 1 406 507 - -
Tsu05g00066 635 CDD CY 544 631 IPR000010 GO:0004869
Tsu05g00066 635 Pfam S-locus glycoprotein domain 205 273 IPR000858 GO:0048544
Tsu05g00066 635 Pfam Aspartic acid proteinase inhibitor 547 632 IPR000010 GO:0004869
Tsu05g00066 635 Coils Coil 459 479 - -
Tsu05g00066 635 Gene3D - 17 108 IPR036426 -
Tsu05g00066 635 SUPERFAMILY Cystatin/monellin 548 633 IPR046350 -
Tsu05g00066 635 SUPERFAMILY alpha-D-mannose-specific plant lectins 22 167 IPR036426 -
Tsu05g00066 635 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 5 376 - -
Tsu05g00066 635 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 372 545 - -
Tsu05g00066 635 Gene3D - 110 242 - -
Tsu05g00066 635 ProSiteProfiles Protein kinase domain profile. 429 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g00066 635 ProSitePatterns Protein kinases ATP-binding region signature. 435 461 IPR017441 GO:0005524
Tsu05g00066 635 Pfam Protein tyrosine and serine/threonine kinase 432 575 IPR001245 GO:0004672|GO:0006468
Tsu05g00066 635 SUPERFAMILY Protein kinase-like (PK-like) 409 545 IPR011009 -
Tsu05g00066 635 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 376 - -
Tsu05g00066 635 PANTHER SERINE/THREONINE-PROTEIN KINASE 372 545 - -
Tsu05g00066 635 Gene3D - 541 633 - -
Tsu05g00066 635 Pfam D-mannose binding lectin 46 124 IPR001480 -
Tsu05g00066 635 ProSiteProfiles Bulb-type lectin domain profile. 1 107 IPR001480 -
Tsu05g00066 635 SMART blect_4 5 109 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00066 Tsu-Chr5 510678 512664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00066 374 545 Receptor kinase-like Gene Family AT3G53380 42.045 4.52e-28 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu05g00066 PK_Tyr_Ser-Thr 4.2e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00066 - - lang:109330973 800.816