Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00043 ATGGATTCAAGGagaatggaagaagaagaaggtccACCATCAAACGATCTATGTTCAATATGTCATGGAAACTTCCAGAATCCATGTCAAGCTAATTGTTCTCATTGGTTTTGTGCTAACTGTATTATGCTTCTCTGGCGACACTCTTCCGCCATTCAACCTTGTAAATGTCCTCTCTGTCGTCGACCCATTAATCTTCTGGTTCCGACcaacaacagcagcaacaacagCGATGATGATCCTCAAACCATGTCTGATATTCAAACCTATAACCGTATTTTTGGTCAACAATCTAATGCTCCTATTACTCAGAGAATCCGTGATCTTCCCTTTCTTTTGAGGAGACTTTTTAGGGATTTTGTTAACCCTAATACTTCTCTTCCTCTTGTTATCAGAGCTCGTGTCTTCATTACTATGATACTGAGTGTTATATACATCTTCAGCCCTATTGACATCATTCCAGAAGGAATATTGGGAATAATTGGTCTATTGGATGATGTCCTAATTGCACTAATCTTCTTCCTACATGTTGCCGCCCTTTATAGATCAGTACTTTATCTCCGTCATGGGGGTTCATGA 579 0.3644 MDSRRMEEEEGPPSNDLCSICHGNFQNPCQANCSHWFCANCIMLLWRHSSAIQPCKCPLCRRPINLLVPTNNSSNNSDDDPQTMSDIQTYNRIFGQQSNAPITQRIRDLPFLLRRLFRDFVNPNTSLPLVIRARVFITMILSVIYIFSPIDIIPEGILGIIGLLDDVLIALIFFLHVAALYRSVLYLRHGGS 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00043 192 Pfam Zinc finger, C3HC4 type (RING finger) 15 65 - -
Tsu05g00043 192 SMART ring_2 18 60 IPR001841 -
Tsu05g00043 192 PANTHER UNCHARACTERIZED 13 192 IPR038896 GO:0061630
Tsu05g00043 192 Pfam Protein of unknown function (DUF1232) 138 171 IPR010652 -
Tsu05g00043 192 ProSitePatterns Zinc finger RING-type signature. 33 42 IPR017907 -
Tsu05g00043 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 101 IPR013083 -
Tsu05g00043 192 PANTHER BNAC07G13660D PROTEIN 13 192 - -
Tsu05g00043 192 ProSiteProfiles Zinc finger RING-type profile. 18 61 IPR001841 -
Tsu05g00043 192 SUPERFAMILY RING/U-box 13 70 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00043 43 192 C3H Transcription Factor Family AT1G72175 63.158 2.83e-55 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00043 K15707 - thj:104809729 224.172