Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00027 ATGGGAAGAGGAAAGATAGAGATAAAAAGGATTGAGAATACAACAAATAGGCAAGTGACATTCTGTAAGAGAAGAAATGGACTTTTGAAGAAAGCTTATGAGTTATCAGTTTTGTGTGATGCTGAAGTTGCTCTCATTGTCTTCTCCAGCCGTGGAAGACTTTATGAATATTCAAACAACAACATAAGGTCAACAATTGATAGGTACAAAAAGGCATGTTCTGATCATTCAAGTACCACCACTACCACTGAGATTAATGCTCAGTATTATCAGCAAGAATCTGCAAAGCTGCGACAACAAATACAGATGCTGCAAAACTCTAACAGGCACTTGATGGGTGATGCTTTAAGCACATTGACTGTGAAGGAACTTAAGCAGCTGGAGAACAGACTTGAAAGAGGAATCACTAGAATTAGATCTAAGAAACATGAGATGCTGCTGGCAGAAATTGAATACTTTCAGAAAAGGGAGATTGAGCTGGAAAATGAAAATCTTTGTCTTCGGACTAAGATAAATGATGTTGAGAGGCAAGTAAACATGGTTTCTGGACAAGAGCTGAATGCAATACAAGCATTAGCATCTCGTAATTTCTTTGATCCAAACATGATGGAAGGTGAAACTTCCTACCATCAATCAGATAAGAAGATTCTTCATCTTGGGtga 663 0.3771 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIDRYKKACSDHSSTTTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKINDVERQVNMVSGQELNAIQALASRNFFDPNMMEGETSYHQSDKKILHLG 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00027 220 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu05g00027 220 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Tsu05g00027 220 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 211 - -
Tsu05g00027 220 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu05g00027 220 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 2 211 - -
Tsu05g00027 220 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Tsu05g00027 220 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu05g00027 220 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Tsu05g00027 220 Coils Coil 87 107 - -
Tsu05g00027 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tsu05g00027 220 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu05g00027 220 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu05g00027 220 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu05g00027 220 Coils Coil 124 144 - -
Tsu05g00027 220 Coils Coil 157 177 - -
Tsu05g00027 220 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu05g00027 220 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00027 Tsu-Chr5 196532 202200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00027 1 220 MADS-box Gene Family AT4G09960 74.348 1.18e-118 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu05g00027 K-box 7.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00027 K09264 - gmx:100301905 405.216