Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00024 ATGAAGCATCGCCGGAGAAGCTGTATTCTGTCATCATCGGAGGAGAAGGATTCCAAACATTTTATGAAAGCCATACTTCCTTCACCCTTTCATTCCAAACAAATTAGAATTCCAGATGAGTTTATAACAAGATTTGGAAATGAACTCACCAATGTGGCTAAGATTACTGTTCCCGATGGTCGTCAATGGGATATGGAACTCAAGAAATGCGGCAACGACGTTTTTCTTTGCAACAAATGGGAAGAGTTTGCAGAATACTATTCTATCAGTTATGGTTGCTATTTAGATTTCAAGTATGAAGGGAATTCTGAGTTTAATGTTGTTATATATGATACAACTTCTCTTGAAATTTGCTATCCATTCAAAACTCCAAGTACTAATGGAAAACCAAACATAGAGTACTGTCCTAACTTTGCTTCCAAAAGAGCAAAGGATGCTGTCAATGGAATCAATCCAAAAAACccttctttttgttcaagataCATGAAGACCACACGGGGCAAATATGTGTATGTTCCTGCTGAATTTGCTCCAAAGTATCTGAAGCTAAATGTTCCCTTCAAGCTCCAAAATTCTCAAGGAAAGCAATGGGAAGTTTCTTGCGTATTGTCTAAAAAAGGAAAATCAATGCGAATAACAACTGGATTCCGTAAATTTGCAAGGGATAACAATCTATTAAAGGGAGTTATTTATCATTTTGAGCTGATCAAGAGTGAGCCGGTTGTTGTGCTCCAAGTTACAACGGCCCACACACCTTGGCAGCAAAAGTGTGTCCAGTCATCAGAGGAGAAGGGAGTTACGGGTTCTGAACATTTTAAGAAGGCCATACTTCCCTCACCCATTCATGCCAAACAAATTAAAATTCCAGATAACTTCATAACAATATTTGGGAATGAACTCAACAATGTTGCTAAAGTTACCGTTCCCGATGGTCGTGTATGGGACATAGAACTGAAGAAATGCGGAGAGAATGTTTTCTTTTGCAACAAATGGCAACAGTTTGCAGAATTCTATTATATAGAATATGGTTGCTACCTGTCTTTCAAATATGAAGGGAAATCAATGTTTAGTGTTATTATATTTGATGCAACTTCTGTTGAGATTGTCTACCCATTCAAAACTCCAAGTAATGGTGGAGAACTATACACAAATTGTCCTAGTCCTAGGAAAAGGTCCAAGGTTGAAACAAGTAAGAGTCAAGGGAAAAAGCTGAAAAGCATCTCTAAACATGCTTGTAAAAGAGCAGAGGTTGCTGCCCTTGAATTCAAACCAAGCTACCCCTATTTTCGTTCAAAAATCGCTGAGCGAAGATATGTGTATGTTCATTGTGACTTTGCTGCAAAGTATCTGAAGCTAAATGTTCCTATAAAGCTCCAAAATGCTCATGGAGAAGAGTGGGAAGTTTTTTGCATACCGAATACTTTTGGATCGTCGGAGATGCGAATAACGAGGGGATTTCCTAATTTTCTAAGGGCCAACAATCTATCACATGGAGattattgtgtgtttgagcTAATCAAGAAGGAGCCGGTTGTGCTAATAGTAACAATGTTTCACATGGTTGACTACCGTGATTAA 1578 0.3752 MKHRRRSCILSSSEEKDSKHFMKAILPSPFHSKQIRIPDEFITRFGNELTNVAKITVPDGRQWDMELKKCGNDVFLCNKWEEFAEYYSISYGCYLDFKYEGNSEFNVVIYDTTSLEICYPFKTPSTNGKPNIEYCPNFASKRAKDAVNGINPKNPSFCSRYMKTTRGKYVYVPAEFAPKYLKLNVPFKLQNSQGKQWEVSCVLSKKGKSMRITTGFRKFARDNNLLKGVIYHFELIKSEPVVVLQVTTAHTPWQQKCVQSSEEKGVTGSEHFKKAILPSPIHAKQIKIPDNFITIFGNELNNVAKVTVPDGRVWDIELKKCGENVFFCNKWQQFAEFYYIEYGCYLSFKYEGKSMFSVIIFDATSVEIVYPFKTPSNGGELYTNCPSPRKRSKVETSKSQGKKLKSISKHACKRAEVAALEFKPSYPYFRSKIAERRYVYVHCDFAAKYLKLNVPIKLQNAHGEEWEVFCIPNTFGSSEMRITRGFPNFLRANNLSHGDYCVFELIKKEPVVLIVTMFHMVDYRD 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00024 525 CDD B3_DNA 445 518 IPR003340 GO:0003677
Tsu05g00024 525 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Tsu05g00024 525 Pfam B3 DNA binding domain 21 110 IPR003340 GO:0003677
Tsu05g00024 525 Pfam B3 DNA binding domain 166 239 IPR003340 GO:0003677
Tsu05g00024 525 Pfam B3 DNA binding domain 440 516 IPR003340 GO:0003677
Tsu05g00024 525 PANTHER B3 DOMAIN-CONTAINING 16 131 - -
Tsu05g00024 525 PANTHER B3 DOMAIN-CONTAINING 393 520 - -
Tsu05g00024 525 PANTHER B3 DOMAIN-CONTAINING 266 394 - -
Tsu05g00024 525 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 16 131 - -
Tsu05g00024 525 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 393 520 - -
Tsu05g00024 525 SUPERFAMILY DNA-binding pseudobarrel domain 150 244 IPR015300 -
Tsu05g00024 525 SMART B3_2 21 113 IPR003340 GO:0003677
Tsu05g00024 525 SMART B3_2 272 364 IPR003340 GO:0003677
Tsu05g00024 525 SMART B3_2 428 521 IPR003340 GO:0003677
Tsu05g00024 525 SMART B3_2 161 248 IPR003340 GO:0003677
Tsu05g00024 525 CDD B3_DNA 271 362 IPR003340 GO:0003677
Tsu05g00024 525 ProSiteProfiles B3 DNA-binding domain profile. 271 364 IPR003340 GO:0003677
Tsu05g00024 525 ProSiteProfiles B3 DNA-binding domain profile. 456 521 IPR003340 GO:0003677
Tsu05g00024 525 CDD B3_DNA 155 239 IPR003340 GO:0003677
Tsu05g00024 525 PANTHER B3 DOMAIN-CONTAINING 138 248 - -
Tsu05g00024 525 CDD B3_DNA 19 111 IPR003340 GO:0003677
Tsu05g00024 525 Gene3D - 12 114 IPR015300 -
Tsu05g00024 525 Gene3D - 265 365 IPR015300 -
Tsu05g00024 525 SUPERFAMILY DNA-binding pseudobarrel domain 17 112 IPR015300 -
Tsu05g00024 525 ProSiteProfiles B3 DNA-binding domain profile. 155 250 IPR003340 GO:0003677
Tsu05g00024 525 SUPERFAMILY DNA-binding pseudobarrel domain 270 363 IPR015300 -
Tsu05g00024 525 Gene3D - 407 524 IPR015300 -
Tsu05g00024 525 Gene3D - 138 251 IPR015300 -
Tsu05g00024 525 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 138 248 - -
Tsu05g00024 525 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 266 394 - -
Tsu05g00024 525 SUPERFAMILY DNA-binding pseudobarrel domain 436 518 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00024 Tsu-Chr5 172967 181389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00024 380 522 B3 DNA Binding Superfamily AT3G18990 33.333 5.89e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu05g00024 B3 1.6e-09 CL0405