Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00011 ATGGCAATGACAGATAATAGACAAAGGAATATGCCTCTTTCAGATGACAGAGTACCGCCAAGAGGCCAAACACTTGCCTATCTAGAAGCAGTTATACTCATCAATCCTATAGAACCGGAACTTAAAGGAGAGACATATAATGGAGGAAGCACAAGAAGTAAACCCAGCCAACTAAAAACTGCATACGATACCAAGGAAGCAAAGTCGCAATGCAAAAACAAGAGCAAAGAGGTTTCCACTTTGACAGCACACAAAACACACTCAACCGAATCTCTCGGAGGGATGGGCTCAACTCCTTGCCCATCTTCCACCACTGGTGAAAATGGTGCTCAAACTGCGAATCCAAATTACCTTCAGTGGTGTCGCCAAGACAGCCACATCACCGTTGCTCTCATGTCCTCGTGTGGACCGGAAGCACAAATTGTCATTGCGTCTGCCACATCCTCTGCTGATGCATGGAGTAAACTCCAAAAGGCATACTCAAATCGTTCGCGTGCCAGAACTATGTCACTCAAAGAACGACTTGCAACCATTTCCAAAGGTTCATCCTCTGTTCATGATTACCTTCGAACCATCCGTTCCATCGGTGATGAATTAGCCTTAATTGGCAATCCCGTTGATGATCTTGACCTTGTCATTGCCGCTGTCAATGGCCTTGGCCCTACCTTCCGTGAGTTCGGCACTTCCATTCGCACCAGAGACACACCTATCCAATTCGATGAGTTATTTGATAAATTGGTAGACTTCGAAATCTACCTTCAACGTGATGAACAACACACTCTGTCTGCTCCTATCACTGCCAATATGGCTCATCGCCAAAACCACCACTATAATCGGTCCAATCAACAGCAATCTCGGTTTCGCAGGCCTTATTTCTCTCCATCAAACAATACTCGGTCAGTTTCAATATGTCAGTATTGCGACAAGCGAGGCCACATCGCAAAAGACTGCAATGAGCTTCGCGGCTATCATTATAAAAATTCTGCAAAACCCCGTGCTCATCATGTGCAAAAACAGAACCATGGAGAGTCCTCTTCACTGCTAGATTCTGGCGCTTCCCATCATGTTACAAATGATATTGCCAATCTCACTCTTGCTAAAGAAGTAACTGAACCTGATCAACTCTTCGTTGCCGATGGTAAACCTCTTTCTATTTTGCACAATGGTAACACTACTATTTCAACTTCGTCTAAACCACTTGCATTATGTGATGTCCCACATGTTCCAAATGTTTCTCAAAATCTTATTTCGGTTTCACAATTATGCAAAGCTAATGatgtttcaattgaattttttccatGGCACTTTGAAATTAAGGATTTGAAGACAGGGAAGATGTTGCTGCAAGGAAACAATGAAGGCAACCTCTACACTTTACCATCCAGCCGCAACTCACCCCAACTTCACCATGTCGTCAAGCCACCCTCCACCGAACTTTGGCACAACCGTCTCGGCCATCCAGATTCCCGCATCCTCCGTTGTGTCCTCCAGTCTCACAAGTTGTCTTTTGTTTCCTCCAATAAAAATCATTGTTCTGATTGCTTAGCTAATAAGAGTCACAAGTTACCTTTCAATAAGTCTAGTTTATCTAGTAAAAGTCCTTTAGACATTATTTTCTCTGATGTATGGGGCCCTGCTCCTTTCCTTTACTTTGAATGCCAAATTAAACTTAAACCGATTACTATTATGAAGTAA 1695 0.4289 MAMTDNRQRNMPLSDDRVPPRGQTLAYLEAVILINPIEPELKGETYNGGSTRSKPSQLKTAYDTKEAKSQCKNKSKEVSTLTAHKTHSTESLGGMGSTPCPSSTTGENGAQTANPNYLQWCRQDSHITVALMSSCGPEAQIVIASATSSADAWSKLQKAYSNRSRARTMSLKERLATISKGSSSVHDYLRTIRSIGDELALIGNPVDDLDLVIAAVNGLGPTFREFGTSIRTRDTPIQFDELFDKLVDFEIYLQRDEQHTLSAPITANMAHRQNHHYNRSNQQQSRFRRPYFSPSNNTRSVSICQYCDKRGHIAKDCNELRGYHYKNSAKPRAHHVQKQNHGESSSLLDSGASHHVTNDIANLTLAKEVTEPDQLFVADGKPLSILHNGNTTISTSSKPLALCDVPHVPNVSQNLISVSQLCKANDVSIEFFPWHFEIKDLKTGKMLLQGNNEGNLYTLPSSRNSPQLHHVVKPPSTELWHNRLGHPDSRILRCVLQSHKLSFVSSNKNHCSDCLANKSHKLPFNKSSLSSKSPLDIIFSDVWGPAPFLYFECQIKLKPITIMK 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00011 564 MobiDBLite consensus disorder prediction 59 83 - -
Tsu05g00011 564 MobiDBLite consensus disorder prediction 1 20 - -
Tsu05g00011 564 Pfam Rhamnogalacturonate lyase family 1 44 IPR010325 -
Tsu05g00011 564 Pfam gag-polypeptide of LTR copia-type 122 251 - -
Tsu05g00011 564 SUPERFAMILY Retrovirus zinc finger-like domains 295 323 IPR036875 GO:0003676|GO:0008270
Tsu05g00011 564 MobiDBLite consensus disorder prediction 331 351 - -
Tsu05g00011 564 PANTHER - 96 432 - -
Tsu05g00011 564 ProSiteProfiles Zinc finger CCHC-type profile. 304 319 IPR001878 GO:0003676|GO:0008270
Tsu05g00011 564 PANTHER GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED 96 432 - -
Tsu05g00011 564 MobiDBLite consensus disorder prediction 84 109 - -
Tsu05g00011 564 MobiDBLite consensus disorder prediction 42 109 - -
Tsu05g00011 564 Pfam GAG-pre-integrase domain 455 519 IPR025724 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00011 Tsu-Chr5 89346 92197 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00011 1 156 Polysaccharide Lyase AT1G09890 36.310 2.11e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00011 - - var:108323742 325.479