Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04928 ATGGTTGAGGAGAGGGACGTGGAGCAGATGATAccaacatcaaaatcaaaatcatcatcatcatcatcttcatcatcatctacagCAGGATCAGCCGGATCTGGGCTCATAGAGCCTCTGCTTGTCAATAACAGCAGGCTCAATACTACTTCCCAAATTGCCATTGTTGGAGCCAAAATTTGTCCGATTGAAAGTCTCGACTATGaGATCATTGAGAATGATTTATTCAAACAAGACTGGAGGTCTAGAGGAAAGGCTGAGCTAGTGCAGTATATGATTCTGAAATGGACCATTGCACTTCTTATTGGTTTAGGCACAGGCCTTGTTGCCTTCTTCAACAACATTGGAGTTGAGAATATTGCCGGTTTCAAGCTTCTCCTCACCAACGATCTCATGCTTAATCACAAGTATTATAAGGCTTTTGCATTCTATGCTAGTTGTAATATGGTTTTAGCCATTGCTGCAGCATCCCTCTGTGCCTACATTGCCCCTGCAGCAGCAGGATCTGGCATACCTGAGGTCAAGTCATATCTCAACGGCGTAGACGCTCCTTCTATATTGGCTCCAACCACCCTCTTTATAAAGatttttggttcaatttttggGGTTGCAGCTGGTTTTGTTGTGGGTAAGGAAGGACCTATGGTTCATACCGGTGCTTGCATAGCTAATTTACTTGGACAAGGTGGTTCTGAAAAATATGGACTAACCTGGAAAGGATtcagatattttaaaaatgacagAGATCGAAGGGATTTTATCACATGTGGTGCGGCTGCTGGTGTTGCTGGTGCCTTTCGTGCCCCAGTTGGTGGTGTCCTTTTTGCACTTGAAGAAGCAGCTTCTTGGTGGAGGAGTGCTCTTCTGTGGCGAACATTTTTCACTACAGCTGTAGTAGCTGTAGTGTTGAGAGGTTTCATGGAATATTGCAAAGGTGAAAAATGTGGTCTTTTTGGGGAAGGAGGTTTGATAATGTTTGATGTCAATTCAGTAAAGCCTGCATACAGCATACCTGACTTACTGGTAGTTATATTTCTTGGAGTTATTGGAGGTCTTTTGGGAAGCCTTTATAATTATCTCGTGGATAAGGTCCTTCGCACTTACAGCGTCATTAATGAGAAAGGtcctatatttaaaataatacttGTGATGATGATATCGTTTTTGACCTCTTGCTGTTCATTTGGGGTTCCATGGCTATCAAAGTGCATCCCTTGTCCTTCTCATGCGGGGGATCAGTGCCCAACCGTAGGGCGCTCTGGACACTACAAGAATTTCCAGTGTCCACCTAATCACTACAATGACCTCGCCTCTCTCTTTTTTACTACCAATGATGATGCTATCCGCAACCTCTTTATTGCTGGCTCTGACAAAAGATTCCTGCTCTCCAGTCTCCTAATATTCTTTGTGGCAATCTACTTCCTCGGAATCATCACTTACGGCATTGCAATTCCGTCAGGGCTCTTTATTCCGGTGATACTTGCAGGGGCCTCATATGGTCGTGTTGCAGGAAGTTTGTTAAGTCCATTCACAGTTCTGGATGTGGGCTTGTTTGCACTCTTGGGAGCTGCATCCTTCCTTGGTGGCACAATGAGAATGACTGTTTCTCTTTGTGTCATACTTCTTGAACTCACTAACAACCTCCTCATGCTACCATTGGTCATGTTGGTTCTCCTTATCTCAAAGTCTGTGGCAGATTGTTTTAACAAAGGTGTTTATGATCAGATAGTGGAAATGAAGGGGTTGCCTTATTTGGAAGCTCACGCGGAACCGTACATGAGGCAGTTAGTTGCAGGTGATGTTGTTTCTTGTCCGTTGTTTACATTTTCTAAGATTGAAAAAGTGGGGAATATTGTGCACACTTTAAAGGTGACGCGGCATAATGGGTTCCCTGTAATTGACGAGCCCCCATTATCAGATACAGCAGAGTTGTGTGGGTTGGTTTTGAGGTCACATCTGCTTGTAATTCTTAAATACAAGGTATTTACGACGACGCAAGAGGGGATGCCCTTGATTATGAATAAGTTGAGGGCACATGATTTTGGAAAGCCAGGTTCGGGGAAGGGGATAAGGCTGGATGATTTAGAGATATCAGAGGAGGAGATGGAAATGTATGTTGATCTGCATCCTATTACCAACAGGTCACCACATACAGTTATGGAGACATTGTCTCTGGCTAAAGCAGCTGTTCTATTCCGCGAGCTTGGCCTCAGGCATTTGTTGGTCCTCCCAAAGACACCTGGAAGGCTTCCCATTGTGGGGATCATGACTAGACACGACTTCATGCCAGAACATATATTGGGATTATACCCTCACTGCAATCCCTACAAGTAA 2334 0.4246 MVEERDVEQMIPTSKSKSSSSSSSSSSTAGSAGSGLIEPLLVNNSRLNTTSQIAIVGAKICPIESLDYEIIENDLFKQDWRSRGKAELVQYMILKWTIALLIGLGTGLVAFFNNIGVENIAGFKLLLTNDLMLNHKYYKAFAFYASCNMVLAIAAASLCAYIAPAAAGSGIPEVKSYLNGVDAPSILAPTTLFIKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSEKYGLTWKGFRYFKNDRDRRDFITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFMEYCKGEKCGLFGEGGLIMFDVNSVKPAYSIPDLLVVIFLGVIGGLLGSLYNYLVDKVLRTYSVINEKGPIFKIILVMMISFLTSCCSFGVPWLSKCIPCPSHAGDQCPTVGRSGHYKNFQCPPNHYNDLASLFFTTNDDAIRNLFIAGSDKRFLLSSLLIFFVAIYFLGIITYGIAIPSGLFIPVILAGASYGRVAGSLLSPFTVLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKSVADCFNKGVYDQIVEMKGLPYLEAHAEPYMRQLVAGDVVSCPLFTFSKIEKVGNIVHTLKVTRHNGFPVIDEPPLSDTAELCGLVLRSHLLVILKYKVFTTTQEGMPLIMNKLRAHDFGKPGSGKGIRLDDLEISEEEMEMYVDLHPITNRSPHTVMETLSLAKAAVLFRELGLRHLLVLPKTPGRLPIVGIMTRHDFMPEHILGLYPHCNPYK 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04928 777 MobiDBLite consensus disorder prediction 12 33 - -
Tsu04g04928 777 SUPERFAMILY CBS-domain pair 589 762 IPR046342 -
Tsu04g04928 777 CDD CBS_pair_voltage-gated_CLC_euk_bac 588 764 - -
Tsu04g04928 777 Pfam Voltage gated chloride channel 153 566 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g04928 777 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 36 774 - -
Tsu04g04928 777 MobiDBLite consensus disorder prediction 1 33 - -
Tsu04g04928 777 Gene3D Clc chloride channel 87 585 - -
Tsu04g04928 777 PRINTS Plant CLC chloride channel signature 312 319 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu04g04928 777 PRINTS Plant CLC chloride channel signature 280 288 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu04g04928 777 PRINTS Plant CLC chloride channel signature 294 304 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu04g04928 777 PRINTS Plant CLC chloride channel signature 69 77 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu04g04928 777 PRINTS Plant CLC chloride channel signature 436 452 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu04g04928 777 PRINTS Chloride channel signature 195 214 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g04928 777 PRINTS Chloride channel signature 572 586 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g04928 777 PRINTS Chloride channel signature 164 181 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g04928 777 PRINTS Chloride channel signature 259 278 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g04928 777 PRINTS Chloride channel signature 534 553 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g04928 777 PRINTS Chloride channel signature 516 532 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g04928 777 PRINTS Chloride channel signature 484 504 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g04928 777 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 36 774 - -
Tsu04g04928 777 Gene3D - 586 763 IPR046342 -
Tsu04g04928 777 SUPERFAMILY Clc chloride channel 73 588 IPR014743 -
Tsu04g04928 777 CDD ClC_6_like 64 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04928 Tsu-Chr4 56126398 56130051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04928 35 777 Ion Channels AT5G49890 75.570 0.0 1117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04928 K05016 - jre:108988922 1134.01