Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04916 ATGGAACTTTCCAGCAACCAAGATGGGGAAATCCCAATCCCAATAATAAAcaacactaataataataataattatggtggtggtggtggtaatTCTAATGGACATGCTCATCACATGCTTCATCACCATCAACATGTTCATGACCATCCTCCTTCACTACACCACAACCATAATCACAGTAATATTATATCATCTTCCTCAACTGCAGCAGCAGTACCAGTGGCAGTGGCAGTAGTACCCCAAAACCCTACAATTAATGGCACTACCACCACATCTATGCAAGCTGTCAGTGGTGTGGAATTAGATCATGATCACTCCTCCTACAAGAAATCATCAACAGTTGTAAGGTACAGAGAATGTCTTAAAAACCATGCAGCTGCAATGGGAGGGAATGCCACAGATGGTTGTGGTGAGTTCATGCCAAGTGGTGAACAAGGTACAATTGAGGCACTCAACTGCTCTGCCTGTAATTGCCACAGAAACTTCCACAGAAAAGAGGTTGAAGGTGAGACTGAGGAAGACAgctaccaccaccaccaccataacTCTTCCGCCTTCAACTTCAACTTCAACAGGCAGCAGCAGCAGCACCACCACAGCATGAGGAAATTCATGTTACCTCTTCCTGATCTTGgctaccaccaccaccatcatccTACTCCTAATACTGCATCAGCAGCAACaggtaacaacaacaacaacaacattcttCCTTCTAGAGCtgtaccaccaccaccacatgGACATGGCCACATCATTATGCCATTCAACTACAACATACCTTCTGAATCTGATGAACAAGAAGATCAGGCAGCTAGACCACTTACTCAGCAGCAACAGCAGGTGGTGATGAAGAAAAGGTTCAGAACAAAGTTCTCACAGGAACAGAAGGACAAAATGTTCAACTTTGCTGAAAAAGTTGGGTGGAAATTTCAGAAGCAAGAGGAATCTCTAGTGCAACAGTTCTGCCAAGAGATTGGAGTGAAAAGAAGAGTGCTTAAGGTTTGGATGCATAACAATAAACACAATCTCGCCAAAAAACAATTACAAGATGAACATACTACTGCTAATCATCTCCCAACtccttaa 1089 0.3756 MELSSNQDGEIPIPIINNTNNNNNYGGGGGNSNGHAHHMLHHHQHVHDHPPSLHHNHNHSNIISSSSTAAAVPVAVAVVPQNPTINGTTTTSMQAVSGVELDHDHSSYKKSSTVVRYRECLKNHAAAMGGNATDGCGEFMPSGEQGTIEALNCSACNCHRNFHRKEVEGETEEDSYHHHHHNSSAFNFNFNRQQQQHHHSMRKFMLPLPDLGYHHHHHPTPNTASAATGNNNNNNILPSRAVPPPPHGHGHIIMPFNYNIPSESDEQEDQAARPLTQQQQQVVMKKRFRTKFSQEQKDKMFNFAEKVGWKFQKQEESLVQQFCQEIGVKRRVLKVWMHNNKHNLAKKQLQDEHTTANHLPTP 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04916 362 MobiDBLite consensus disorder prediction 1 30 - -
Tsu04g04916 362 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 116 167 IPR006456 -
Tsu04g04916 362 MobiDBLite consensus disorder prediction 209 279 - -
Tsu04g04916 362 SUPERFAMILY Homeodomain-like 280 346 IPR009057 -
Tsu04g04916 362 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 347 - -
Tsu04g04916 362 MobiDBLite consensus disorder prediction 1 36 - -
Tsu04g04916 362 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 285 341 IPR006455 -
Tsu04g04916 362 MobiDBLite consensus disorder prediction 221 238 - -
Tsu04g04916 362 MobiDBLite consensus disorder prediction 260 279 - -
Tsu04g04916 362 Pfam ZF-HD protein dimerisation region 115 167 IPR006456 -
Tsu04g04916 362 Gene3D - 270 347 - -
Tsu04g04916 362 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 117 166 IPR006456 -
Tsu04g04916 362 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 36 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04916 Tsu-Chr4 56004734 56007122 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04916 109 347 ZF-HD Transcription Factor Family AT2G02540 46.457 4.02e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tsu04g04916 ZF-HD_dimer 8.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04916 - - mtr:MTR_4g134580 440.269