Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04912 atgaatgatCCAAGCAGCCTCCACTTGAAGAAGGAACTCACCCAAATTCGAAAGGCTTCTCGTGTCTTGAGGGATCCCGGCACTACTTCTTCCTGGAAATCCACCACTTCCAGATCTGCTGCTCCATTCaggaatcatcatcatcatccttctccttctccttctctttctgggaataataataataataataataacagcaagaaagtcttcttatACAACTGGAACAACTACAAATCATCATCCTCCTTCAACCACCTtcaagaacaacaacaagaCGACCACTCTTCCTCCTCCCTTCTTGCAAGTTTAGAAGACGGTTTCAGCGACGCTCCTAACGTTCTTGATTCTAAGAGTGATGCTGGGACCCGCTCTTCCTTTTTCCCAAATTCAAATCCCAAAAGAACAATCCCTCTTCATctcaataagaaaaaaaagaccactaagaaaaacaacaacaacaacaacaacaacaatagtaAGCCATTGCTCCTACCACGCCATTCAAACAATCATCACTCCGACGAAGACGACGATGATTATTCTAACTCCATTTCCGGGGCTTCTTCTCTTCTTCGAAAACTCAAAAACCGCAACAATTCCTCCAACTTCATCACAAGAATAAGAAGTTCCAAAGACGATGATTCTTCTTATACCTATAGTACCCCTGCATTGTCGGCCACCTCTTTCAACAGGTACCGTCGCCGTTATCCTAGCACCGTTGGATCCTTTGACGGCACAACTACCTCAATGAATGACGGTGACGACGAGATTGATGATGATCACTTGGATCTGCCTGGTCGTCAAGGATGTGGAATTCCTTGCTATTGGTCTAAGAGAACAACTCCCAGAAATAGAGTTGCCGGCTGTGGTAGTTGTTGTTCTCCTTCCCTCTCTGACACTTTGAGAAGGAAAGGTAGCAGCATTCTCTGTGGAACTCAATCTATGTATTCCAGACACTGCAGATCCTCTTCTTCCACTTCACTGCCGCACAAGCGGAGAATGTCTTTGAGGAATGCTCGCGGAGGAGGAGGTGTTGTTCCTCTCCTCACTAGCACTAGCAGTGGTGATGTTAGACAGGACTCCTCATCTATTGGAATTGGTAGGAGTAGGACCGATGATGAACTTTCTACTAACTATGGTGAACTTGATCTTGAGGGATTGAGCAGACTTGATGGAAGAAGGTGGTCTTCCAGTTGTAGGAGTCAAGAGGGTTTGGAGATTGTCCCTCTCAATGAGGATGAAGAAGGCTCCTCTGAAAACGGTAGGAGTTTCAGCCATAAGTATAAGCCTTTGTTCTTTGGTGAAATCATTGGTCAGAATATTGTGGTTCATTCGCTTGTCAATGCTGTTTCCAGGGGCAGAATTGCTCCTGTCTATCTTTTTCAAGGTCCCCGTGGGACTGGCAAAACATCTACTGCTAGGATATTCGCTGCTGCCTTGAACTGTGTGGCTTCCGATGAAGGTAAGCCTTGTGGATACTGCAGGGAATGTGCTGATTTCGTTTCTGGTAAGAGCCTTGATCTGGTGGAAATTGATGGAACTAGTAAGAAAGGGATTGATAAAGCTAGATATCTTCTGAAAAGATTATCCGTCGGGTCTTCTACGGCAGCATCCTCACGATATACTGTTTTTGTTATTGACGAGTGTCACTTGTTAACCTCCAAGACATGGCTGGGATTTCTCAAGTTTCTCGAAGAACCGCCACAGCGAgttgtattcatatttataacatCAGATCTTGACAATGTGCCACGAACAATACAGTCTCGATGCCAGAAGTAccttttcaataaaattaaagacgGGGATATCGTAACCAGGTTAAGGAAAATATGTACTCAGGAGAACCTTGATGTGGAAACAGATGCACTGGACCTTATTGCCATGAATGCAGACGGTTCACTTCGAGATGCAGAGACAATGTTAGAGCAGCTTAGTTTGCTGGGGAAAAGAATCACTACTTCTCTTGTCAACGAACTTGTTGGAGTTGTTTCAGATGAAAAACTATTGGAACTTTTGGAGTTAGCAATGTCAGCAGACACTGCAGAGACGGTGAAAAGGTCCAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCTGGGCTTATTATGGACATCATTGCTGGATCATATGCAGTCGTTGATACCAAACCTGACGGTTCATTCGTCGGTGGTCGGAGTTTGAATGAAACGGAGTTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGGACTTCCAGTGAGCGCTCAACATGGTTTACAGCAACTCTTTTACAGCTTGGTTCCGTACCTTCTTCAGATCATACTCAGTCAAGCAGCAGCAGGAGGCAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGGTTCAAGAGACATTTCTTCTTTCAAGCACAAGTCAGACCTCCAATATATGTCTCAAAAGTCAACACCCACTGCTTCCCACCTAAGAGCAGTAAATGACAGTTCCAGCCTTCAAATGGATATGCCCTCAAAAATTGATGGTTTCAGCATGAAATCAAAGCCGTCAAATAGCCCGGTTATAGATGATGGCTCCACAGTGGTCTCGTCGGATGATCTTATTGTTGGGAATACAATGTTTAGATGCATAGATTCAGGGAAGTTATGTGACATATGGGGATGTTGTATTGAGAGGTGCCACTCAAAGACATTAAGGCAGCTGCTACACGATCACGGAAAGCTTGTGTCCATATCTGAAGTTCAAGGTGTTCTCGTAGCATATGTTGCATTTGGGGATGAAGATGTTAAACTTAGggttgaaaggttttcaagtaGCATTACAAACTCCTTGGAAATTGTTCTTAGACGCATTGTGGAGGTCAGAATTATCCTCTTGCCAGACGGTGAAGGTGGAAAACAGATTAATCTGCCGGGTCTAAAGCAAAGTGCATCAACATTGGCAAGTGAGGACGAACAAAGGCGAGGTCATAGGAATGGAACTGTGTCATATTCAAGTTTGTCTCAATCTGCCATGGGTTCATCAGATATTCTGACCGAAGGAAATGGCGTTAAGGAAAGAAGACGGGATAATCCAGTGCAGAGAATTGAATCCATCATTCGTGAGCAGAGGTTGGAAACTGCCTGGTTGCAGGCTGTAGAAAAAGGTTCCCCTGGATCGCTGAGTCGTTTGAGACCTGAGAAGAATCAAGTCCTGCCTCAAGATGGTCTCTATTGTGTAAACCCTCTGGAGTCCATGGATTCAACAAGATATTCCTCTCATCAGCATATGGAAGATGATACAAATAGTGatcttaaaattttgagtctTCAAAATGGAAGGGTTCTACAGAAGGATCAGAGTAGTAAAAGAGCTGACGGTTATCCCATGTCCCCAAGTATATTGCATGACAGCAGTTTAGCAATAATGTCCGGAAAAGATAACCCGGGTTATGAATCGGGTTCGGGAGCTGGAGGTTGTGGGTTTTTATGTTGGAATAAAAAGTCCAAGACTAGAAGGGCAGTGAAGATAAAAGGTACCCCGGTTGGAGGATCGCGTAAAGTTGGGCGTTCTACATTGTTTGGTGAGTGTGGTAAGAGGAAGAAAAAGGAGGGTAAAAGATAA 3624 0.4167 MNDPSSLHLKKELTQIRKASRVLRDPGTTSSWKSTTSRSAAPFRNHHHHPSPSPSLSGNNNNNNNNSKKVFLYNWNNYKSSSSFNHLQEQQQDDHSSSSLLASLEDGFSDAPNVLDSKSDAGTRSSFFPNSNPKRTIPLHLNKKKKTTKKNNNNNNNNNSKPLLLPRHSNNHHSDEDDDDYSNSISGASSLLRKLKNRNNSSNFITRIRSSKDDDSSYTYSTPALSATSFNRYRRRYPSTVGSFDGTTTSMNDGDDEIDDDHLDLPGRQGCGIPCYWSKRTTPRNRVAGCGSCCSPSLSDTLRRKGSSILCGTQSMYSRHCRSSSSTSLPHKRRMSLRNARGGGGVVPLLTSTSSGDVRQDSSSIGIGRSRTDDELSTNYGELDLEGLSRLDGRRWSSSCRSQEGLEIVPLNEDEEGSSENGRSFSHKYKPLFFGEIIGQNIVVHSLVNAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVASDEGKPCGYCRECADFVSGKSLDLVEIDGTSKKGIDKARYLLKRLSVGSSTAASSRYTVFVIDECHLLTSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKICTQENLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSADTAETVKRSRELMDSGVDPMVLMSQLAGLIMDIIAGSYAVVDTKPDGSFVGGRSLNETELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSVPSSDHTQSSSSRRQSCKTTEDDPSSGSRDISSFKHKSDLQYMSQKSTPTASHLRAVNDSSSLQMDMPSKIDGFSMKSKPSNSPVIDDGSTVVSSDDLIVGNTMFRCIDSGKLCDIWGCCIERCHSKTLRQLLHDHGKLVSISEVQGVLVAYVAFGDEDVKLRVERFSSSITNSLEIVLRRIVEVRIILLPDGEGGKQINLPGLKQSASTLASEDEQRRGHRNGTVSYSSLSQSAMGSSDILTEGNGVKERRRDNPVQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGLYCVNPLESMDSTRYSSHQHMEDDTNSDLKILSLQNGRVLQKDQSSKRADGYPMSPSILHDSSLAIMSGKDNPGYESGSGAGGCGFLCWNKKSKTRRAVKIKGTPVGGSRKVGRSTLFGECGKRKKKEGKR 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04912 1207 MobiDBLite consensus disorder prediction 777 791 - -
Tsu04g04912 1207 MobiDBLite consensus disorder prediction 116 137 - -
Tsu04g04912 1207 MobiDBLite consensus disorder prediction 338 371 - -
Tsu04g04912 1207 MobiDBLite consensus disorder prediction 18 68 - -
Tsu04g04912 1207 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 144 1145 - -
Tsu04g04912 1207 MobiDBLite consensus disorder prediction 151 167 - -
Tsu04g04912 1207 MobiDBLite consensus disorder prediction 777 864 - -
Tsu04g04912 1207 MobiDBLite consensus disorder prediction 24 41 - -
Tsu04g04912 1207 MobiDBLite consensus disorder prediction 999 1017 - -
Tsu04g04912 1207 MobiDBLite consensus disorder prediction 813 844 - -
Tsu04g04912 1207 Gene3D - 415 598 IPR027417 -
Tsu04g04912 1207 MobiDBLite consensus disorder prediction 792 812 - -
Tsu04g04912 1207 SMART AAA_5 456 607 IPR003593 -
Tsu04g04912 1207 Pfam DNA polymerase III subunits gamma and tau domain III 654 774 IPR022754 GO:0003887
Tsu04g04912 1207 Gene3D - 602 663 - -
Tsu04g04912 1207 PANTHER PROTEIN STICHEL-LIKE 1 144 1145 - -
Tsu04g04912 1207 Coils Coil 733 763 - -
Tsu04g04912 1207 MobiDBLite consensus disorder prediction 348 371 - -
Tsu04g04912 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 449 647 IPR027417 -
Tsu04g04912 1207 Pfam DNA polymerase III, delta subunit 439 600 - -
Tsu04g04912 1207 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 424 774 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Tsu04g04912 1207 MobiDBLite consensus disorder prediction 50 68 - -
Tsu04g04912 1207 CDD HLD_clamp_pol_III_gamma_tau 600 663 IPR045085 -
Tsu04g04912 1207 SUPERFAMILY post-AAA+ oligomerization domain-like 671 772 IPR008921 GO:0003677|GO:0006260
Tsu04g04912 1207 MobiDBLite consensus disorder prediction 111 182 - -
Tsu04g04912 1207 CDD AAA 438 597 - -
Tsu04g04912 1207 MobiDBLite consensus disorder prediction 986 1030 - -
Tsu04g04912 1207 MobiDBLite consensus disorder prediction 1179 1207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04912 Tsu-Chr4 55949837 55956257 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04912 420 715 Core DNA Replication Machinery Family AT1G21690 24.342 3.25e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04912 - - gmx:100814391 1547.72