Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04909 ATGGCAATAGCAAGAGCAGCATCACCTACCATGAGCATGAGCATGAGTCACGAAGatggaaataataatactactaATTCTAACGACAGCAATACTAATAAGGCAACTACAGTAACAGTagcagatgatgatgatgatgatgatgatcacgAGCATGATTTGGTTATGCCTGGTTTTCGTTTCCATCCAACTGAAGAAGAACTCGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGAAAACGTTTCAACGTTGAGCTTATTACTTTTCTCGATCTTTATCGCTATGACCCTTGGGAACTTCCtgCTTTGGCAGCAATTGGAGAGAAAGAGTGGTACTTCTATGTGCCTAGAGATAGAAAGTATAGAAACGGGGATCGTCCTAACCGTGTAACTACTTCTGGTTATTGGAAGGCAACAGGAGCTGATAGGATGATTAGAACTGAAAACTTCCGTTCAATTGGACTCAAGAAAACCCTAGTTTTCTATTCTGGAAAAGCTCCTAAAGGTATCAGAACCAGCTGGATTATGAACGAGTATCGCTTGCCTCAACATGATACACAAAGATATCAAAagGGTGAGATATCTCTATGCCGAGTATACAAGAGAGCTGGAGTAGAAGATCACCCTTCCCTCCCTCGTTGTCTCCCAATTACAagaccatcatcatcatcatcaagatGTACTACTACTATTAATAAACAGCAGAATGAAATATTGGGAATGGGATTTGTTGTTGGACAATCATCAAAGACAGATGATCAAATACTTAACAAAATGGACGGTGGAAGCAGTAGCAGTGCCGGTGCCGGTGCTGCCCCCGGTAATTCTTCAGATCATGATCATGTGACAACAGCTCTTGGACTTTCCAAGTACAGTCCACCTCATAATAATTACCGTACAGAGGGGGAAGAACAATTGATGATgatgcagcagcagcagcagcagcaacagcAACCAGCAGCTAGGCAATTAGTACAATATGCAGCAGCAGGAGGAGGAGGAAACTCTTTGTTTGTCCCAGTCTGTGGTGGTGCCATTTTCCCTGTTCCAGCTTCAACGTCTGCAGCAGCTAGTTGTTCTAATAACGGTACTACAAGTGCTGCAATGATGATGGATGAACTTAACAGACTTGTAAGTTATCAACAACAGCAACAATACTGTTACAATGTTCAAAACAATATTATTCCTAGTACAAATCCCAATAATCATTTCTCTACTTTGCTGATGCAACCAATGTCTCTGCTGCCAAATCAACAACTACCTGCAACCAATTTCTCTGACCGATTGTGGGACTGGAATCTAATCCCTGAGGATCATAATCAACCCAACAGTAGTAGTAACACTACCCCCttcaagtaa 1359 0.387 MAIARAASPTMSMSMSHEDGNNNTTNSNDSNTNKATTVTVADDDDDDDDHEHDLVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHDTQRYQKGEISLCRVYKRAGVEDHPSLPRCLPITRPSSSSSRCTTTINKQQNEILGMGFVVGQSSKTDDQILNKMDGGSSSSAGAGAAPGNSSDHDHVTTALGLSKYSPPHNNYRTEGEEQLMMMQQQQQQQQQPAARQLVQYAAAGGGGNSLFVPVCGGAIFPVPASTSAAASCSNNGTTSAAMMMDELNRLVSYQQQQQYCYNVQNNIIPSTNPNNHFSTLLMQPMSLLPNQQLPATNFSDRLWDWNLIPEDHNQPNSSSNTTPFK 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04909 452 SUPERFAMILY NAC domain 55 201 IPR036093 GO:0003677|GO:0006355
Tsu04g04909 452 MobiDBLite consensus disorder prediction 253 295 - -
Tsu04g04909 452 MobiDBLite consensus disorder prediction 9 38 - -
Tsu04g04909 452 Gene3D NAC domain 64 205 IPR036093 GO:0003677|GO:0006355
Tsu04g04909 452 ProSiteProfiles NAC domain profile. 55 202 IPR003441 GO:0003677|GO:0006355
Tsu04g04909 452 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 39 440 - -
Tsu04g04909 452 MobiDBLite consensus disorder prediction 1 49 - -
Tsu04g04909 452 Pfam No apical meristem (NAM) protein 57 181 IPR003441 GO:0003677|GO:0006355
Tsu04g04909 452 PANTHER NAC DOMAIN-CONTAINING PROTEIN 72-LIKE 39 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04909 Tsu-Chr4 55918853 55921623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04909 54 235 NAC Transcription Factor Family AT2G02450 82.418 4.91e-111 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu04g04909 NAM 5.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04909 - - mtr:MTR_4g134460 576.244