Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04894 ATGGGGGATTTGGAAGACGTTCTTGGTCAATTAACAACCAACACTGACATTATCAAGAAACTCATTCAAACTATCTCATCACCCGACGTCGATTACCGCTCTAAAATCACCATCATACTCAAAACCCTACAACATCAGTTGCGCAATGCAGATATCCAACAATGGATGCTTGAAATTCTTGAACTATATGAACAACTTCTTTTTCGTTCTAAACGAATCACCACCGTCTTTAAATCCGCTTATTGCGCCATTGCAGTCGACTGTACTTTGAGGTACCTTACTGTCCTAGCATCACGCCCTAATTACGAACAAGCTGTTCAGACTATATGGTTAGGTAGGGTTCATCACATAGAGATGTCTTGGGAAAGTGAGTTGTTCTCTGATGAATTAGAAAACTGGAAAGATGAAATCATGAATGCATTTATGGATCCACGGGTCATGAAAAAACTCGCTTGCATTACAGATACTCGACATAATGCGCTTCATAAGTTAGATGCTTTTTTGGCTGAAGCTTGGGACAACCTAGGTCCGGCTAAGGATTTCCATGTCACTGTCAATGACTCGCGTGTGATAGCATCTTTAATCAAAGGCAAGTCTATTGATACTGTTGATGCTGAGAGAATGGATGCAACAATCTCTTATAGCAAAATCAACTCTATGCCAATTGATGAGGTTCCAAATATTGTGGAGTCTCCTCAATGTAGTTCTGCTGTGTTGGAAAACCACGAAATTGAGGACATGAATCAAGAGGCACAGTTGGAAAACAATAGTTCAGATACTGTTGATGTACCCATCTCGCAATCTTGCCAAAATAGTAAGAATAACAAGGCTAATCATAAAAAGACAACTTCTGCccatcagagtgatgttcatCATCCTAGCTTGATGGAACCAAATTGTACTGCTCGTACTCATGAGGGAGGAACAAGTGACACAAGTAAAATTAGTTTGCCTAGTCCAGAAAGGAGGAAACTTCCTCCATTGAAGAAGTATAAAccaaagagaaagaaaagaacatgGAGTAAATTGGAAGAGGATAATCTAAGGGCTGGAGTAAAAGCATTTGAACACGACTGGAAACGCATCGTTAATACTTTTACATTTGAAAGGAGAACCCCAGTTAATTTGAAAGACAAATGGAGAAACATGCTCAAATCTGGACAAGCACAAGAATGA 1176 0.3827 MGDLEDVLGQLTTNTDIIKKLIQTISSPDVDYRSKITIILKTLQHQLRNADIQQWMLEILELYEQLLFRSKRITTVFKSAYCAIAVDCTLRYLTVLASRPNYEQAVQTIWLGRVHHIEMSWESELFSDELENWKDEIMNAFMDPRVMKKLACITDTRHNALHKLDAFLAEAWDNLGPAKDFHVTVNDSRVIASLIKGKSIDTVDAERMDATISYSKINSMPIDEVPNIVESPQCSSAVLENHEIEDMNQEAQLENNSSDTVDVPISQSCQNSKNNKANHKKTTSAHQSDVHHPSLMEPNCTARTHEGGTSDTSKISLPSPERRKLPPLKKYKPKRKKRTWSKLEEDNLRAGVKAFEHDWKRIVNTFTFERRTPVNLKDKWRNMLKSGQAQE 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04894 391 SMART sant 336 386 IPR001005 -
Tsu04g04894 391 Pfam Myb-like DNA-binding domain 340 385 - -
Tsu04g04894 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 332 388 IPR017930 -
Tsu04g04894 391 SUPERFAMILY Homeodomain-like 331 387 IPR009057 -
Tsu04g04894 391 PANTHER MYB TRANSCRIPTION FACTOR 7 385 - -
Tsu04g04894 391 MobiDBLite consensus disorder prediction 253 340 - -
Tsu04g04894 391 MobiDBLite consensus disorder prediction 253 278 - -
Tsu04g04894 391 Gene3D - 328 390 - -
Tsu04g04894 391 ProSiteProfiles Myb-like domain profile. 332 384 IPR001005 -
Tsu04g04894 391 CDD SANT_TRF 340 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04894 Tsu-Chr4 55808061 55810552 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04894 73 384 Single Myb Histone (SMH) Gene Family AT1G15720 30.211 1.10e-23 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu04g04894 Myb_DNA-bind_6 3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04894 - K11111 cam:101499493 220.32