Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04891 ATGAAGCGACTAGCCGACGAATCCGCCGCCGCAACCATACCCAAACCGGTCTTCCTCACCAAAGCAGAGCGTGAACAACTAGCACTTCAACGCCGTCACGACCAAGTCGCCGGCCATAAGCGCAACCAGGAAGAACTTCTCCTTTCCACTAATAACCGTCCCTCCGATCCTAAACCCTCAGATTCCGATCGCCGAGACCGAGACCGCGATCGTGACCGTGAACGTGACAGAGATAGGGATAGGGATAGTTACAGAGAAAGAGATAGAGATAGAGATAGAGATAGAGAACGAGAGCGAGATAGGGAAAGGGAAAGGGATAGAGATAACAGAGATCGGGAACGACGAAACCGTGATAGGGAACGTGAAGAAGAGAATAAGGCTCGCGAGCGTGTTCGTGAGGAGAAGCTAGCGGAGAGGGAGCGTGAGAAAGAGCTTGAATCGATCAAGGAACAATACCTAGGTTCTAAAAAACCTAAAAAGAGGGTTATTAAACCTAGCGAGAAATTTCGATTTTCATTTGATTGGGAAAATACTGAAGATACCTCGCGTGATATGAATAACCTTTACCAAAACCCTCACGAGGCTCAGCTTCTTTTTGGTCGAGGGTTTCGTGCTGGGATGGATCGCCGTGAACAGAAGAAGCTTGCTGCTAAGAATGAGAAAGAGATGAGGGACCAAATCAGGAAGAAGGATGGTATTGAGGAGAAGCCGGAGGAGGCTGACGCTCAGCGGCGTAAGGAGGAGGCAGCGGAAATGTATGACACTTTTGATATGAGGGTTGACCGCCATTGGAGTGAGAAGAAGCTTGAAGAGATGACTGAGAGGGATTGGCGTATATTTAGGGAGGATTACAACATTTCCTACAAGGGTTCAAAGATTCCTCGCCCTATGAGGAGTTGGGTTGAGAGCAAGTTGAGCCAAGAGCTTTTGAAGGCTGTGGAGAAGGCTGGCTACAAAACCCCTTCTCCCATTCAGATGGCTGCTATTCCCCTTGGCCTTCAGCAGCGCGATGTTATCGGTGTTGCAGAGACAGGTTCAGGGAAGACTGCTGCATTTGTTCTTCCTATGTTGAGTTATATCACAAGGCTTCCTCCTATTAGTGAGGAGAATGAAGCTGAGGGTCCTTATGCTGTTGTTATGGCGCCAACTCGTGAGCTTGCTCAGCAGATTGAGGATGAGACTGTTAAATTTGCTCAGTATATGGGAATTAAAGTGGTTTCCATTGTTGGTGGACAGTCCATCGAGGAACAAGGGTTTAAGATAAGGCAGGGTTGTGAAATTGTGATTGCCACTCCTGGTCGTTTGATTGATTGCTTGGAGCGACGCTATGCGGTTCTCAACCAGTGTAATTATGTTGTTCTTGATGAGGCTGATCGAATGATTGATATGGGGTTTGAGCCGCAGGTCATGGGTGTGCTGGATGCCATGCCTTCGAGTAATCTCAAGCCGGAGAATGAAGATGAGGAGCTTGATGAGAAGAGGATTTACAGGACCACATATATGTTTAGTGCCACCATGCCTCCTGCTGTAGAGAGGCTTGCTAGGAAGTATTTGAGGAACCCTGTTGTGGTGACTATCGGCACTGCTGGAAAAGCAACTGACTTGATCAGCCAGCATGTGATCATGATGAAGGAATCTGAGAAATCCTATAAGCTACATAGATTGTTGGATGAGCTTAATGACAAGACCGCAATTGTGTTTGTTAACACCAAGAAGAATGCTGATTTTCTTGCTAAGAATTTGGATAAGGAGGGCTATCGCGTGACCACTTTGCACGGAGGGAAATCGCAGGAACAGAGGGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTGCTTGTTGCAACTGATGTTGCTGGGCGTGGTATTGACATACCTGATGTGGCTCATGTTATCAACTATGATATGCCTGGGAATATTGAAATGTACACCCATCGTATTGGGCGTACTGGTCGTGCAGGAAAGACGGGTGTAGCTACAACATTCTTGACTCTTCAGGACAGTGATGTCTTTTATGACCTTAAGCAGATGCTCATTCAGAGTAACAGTCCTGTTCCACCTGAATTGGCAAGGCATGAAGCTTCCAAATTCAAGCCAGGATCTATTCCCGACAGACCACCTCGGCGAAACGACACTGTTTTTGCTCATTAG 2157 0.4701 MKRLADESAAATIPKPVFLTKAEREQLALQRRHDQVAGHKRNQEELLLSTNNRPSDPKPSDSDRRDRDRDRDRERDRDRDRDSYRERDRDRDRDRERERDRERERDRDNRDRERRNRDREREEENKARERVREEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNNLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMRDQIRKKDGIEEKPEEADAQRRKEEAAEMYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWVESKLSQELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYMGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKSYKLHRLLDELNDKTAIVFVNTKKNADFLAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04891 718 Coils Coil 103 151 - -
Tsu04g04891 718 MobiDBLite consensus disorder prediction 209 247 - -
Tsu04g04891 718 MobiDBLite consensus disorder prediction 57 157 - -
Tsu04g04891 718 Pfam Helicase conserved C-terminal domain 551 656 IPR001650 -
Tsu04g04891 718 SMART helicmild6 575 656 IPR001650 -
Tsu04g04891 718 CDD SF2_C_DEAD 536 665 - -
Tsu04g04891 718 Gene3D - 259 528 IPR027417 -
Tsu04g04891 718 SMART ultradead3 317 539 IPR014001 -
Tsu04g04891 718 MobiDBLite consensus disorder prediction 30 161 - -
Tsu04g04891 718 MobiDBLite consensus disorder prediction 686 718 - -
Tsu04g04891 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 677 IPR027417 -
Tsu04g04891 718 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 298 326 IPR014014 GO:0003724
Tsu04g04891 718 CDD DEADc_DDX23 309 525 - -
Tsu04g04891 718 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 551 695 IPR001650 -
Tsu04g04891 718 Coils Coil 216 236 - -
Tsu04g04891 718 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 453 461 IPR000629 -
Tsu04g04891 718 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 329 524 IPR014001 -
Tsu04g04891 718 Gene3D - 529 716 IPR027417 -
Tsu04g04891 718 MobiDBLite consensus disorder prediction 693 718 - -
Tsu04g04891 718 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 101 711 - -
Tsu04g04891 718 Pfam DEAD/DEAH box helicase 323 513 IPR011545 GO:0003676|GO:0005524
Tsu04g04891 718 PANTHER - 101 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04891 Tsu-Chr4 55782682 55786852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04891 305 705 Eukaryotic Initiation Factors Gene Family AT3G13920 33.333 1.31e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04891 K12858 - gmx:100799264 1121.3