Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04890 ATGCCAATGAAGAAGAAGCTTCATGatattaatgatgatgatgagtgcTTGCACTGCTACGATCATGAATCCGATGAAGAAAATACGTCCGGTTGTGGTTGGGGTTTTATTGGGTTCAAGAAAAGTCAAGTGTTTGATTACAATTTCGGTAGCGagatagaagaagaagatgatgatgatgatgatgatggagatTCAGATGAAGAGCTATTTGAGATAAATCTGAAGAAGGAAGAAGCATTGGATTCAataagagaagaagatgaacaagagTGTGATAGCAGTAGTAGTAGTACTGTGTTCTCTCTTGATATCCATAACGATAAATTAGATGATATTGTTTATGTAGCAGTTGGAGAAAGTAGTTGTTGTTCAAGTATGGAAGCTCTTTCATGGGCCTTGAAACACTCTGTCACACCTAATTCTACTACTGTTTCTCTCGTACATGTTTTCCCTCAAGTCAAGCTAATTCCAACTCCATTGGGAAAAATGCCAAGGACTCATGTAAATCAAGAGCATGTTAACATCTACTTGACCCAAGAGAAAAGCAAGAGGAAAATACTCCTTCAAAAGTTCATTGACCTGTGTGTTGACTCAAagGTTAAAGTGGAGATGTTACTTATTGAGGGTGACAACGTTGCTAAAGCCATTGTAGACTTTGTAGGGAATCTTAATATAAGGAAATTGGTGATTGGAACTACCGCATCTAATCTAAGAAAACATGTTTCAAGAAGGCAAAATTCGATTGCGGATATGGTGTTAAAAACTATACAACAAAGTTGTGATGTCAAAATCATTTGTGAAGGAAAAGAAGTGATCGATCAGATGGTTAATGGTTGCACTTCACAACACTCCGAAGAATTCCATGGTTTGATTCCACGCAAGGGTTTGATGCCTACTTTATTTTGGTGCAGATTTttatag 924 0.3387 MPMKKKLHDINDDDECLHCYDHESDEENTSGCGWGFIGFKKSQVFDYNFGSEIEEEDDDDDDDGDSDEELFEINLKKEEALDSIREEDEQECDSSSSSTVFSLDIHNDKLDDIVYVAVGESSCCSSMEALSWALKHSVTPNSTTVSLVHVFPQVKLIPTPLGKMPRTHVNQEHVNIYLTQEKSKRKILLQKFIDLCVDSKVKVEMLLIEGDNVAKAIVDFVGNLNIRKLVIGTTASNLRKHVSRRQNSIADMVLKTIQQSCDVKIICEGKEVIDQMVNGCTSQHSEEFHGLIPRKGLMPTLFWCRFL 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04890 307 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 25 286 - -
Tsu04g04890 307 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 116 242 - -
Tsu04g04890 307 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 25 286 - -
Tsu04g04890 307 CDD STK_N 113 269 - -
Tsu04g04890 307 Gene3D HUPs 110 272 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04890 Tsu-Chr4 55777317 55778995 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04890 110 269 U-box Gene Family AT2G45910 28.049 7.66e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04890 - - pvu:PHAVU_003G088000g 306.219