Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04888 ATGTCGGCCAAGTCAACGGAGACCTTGCAGCAGCATTCCCAGTACTCATCCTCCCAATTAATGTTCAACCACAACTACGCCACGGCCGGCGTGTGTGAGATCacagaggaggaggaggaggaggaagtcCAGACCAACATCAACCATCTTgataatgaaattgaagaagaagagtgtGTTTATGTGGCAGTTGGTAAGAGTAATACAAGCATGGAAGCTTTATCATGGACACTCAACAACTTGATCACTAATCACTCTACCAATACCATGCTCTATCTCATACATGTTTTCCCTGAAATCAAACACATTCCACATCCATTAGGAGTAGGAATGATTGCAAGGAATCAAGTGAGTGCTGAACAAGTGGAGATTTATTTGGACCAAGAAAGAGACAAGAGGAGACAGCTCCTTCACAAGTTCCTCCATTCTTGCTCTCTTTCCAAGGTTAAGGTGGACACCATCCTAATAGAGAGTGACTTGGTTGCTAAGGCCATCCTTGACCTTATTCCCATTCTTCAAATCACTAATTTAGTCATTGGTGCCAACAAATCCAATCTAAGAAAATCAAGATCAAAGAAAGGAAGTGGTGTTGCTGATCAGGTAGTGCAGAATGCACCAGAAAGTTGCAAGGTTAGAGTTATTTGTGAAGGTAAGGAAGTGAATGaacaaatgatgatgatgatgtcaCCCTCACCCTCTCCTCAGATTATTACCACTACTGCCAATTCTGCAAATAATGATTCTTCTGTGAACACTAAAGAAAATGATTCTGTTTTATGTGTTTGTTTCAAGCCAAAGTTTAAATAA 807 0.373 MSAKSTETLQQHSQYSSSQLMFNHNYATAGVCEITEEEEEEEVQTNINHLDNEIEEEECVYVAVGKSNTSMEALSWTLNNLITNHSTNTMLYLIHVFPEIKHIPHPLGVGMIARNQVSAEQVEIYLDQERDKRRQLLHKFLHSCSLSKVKVDTILIESDLVAKAILDLIPILQITNLVIGANKSNLRKSRSKKGSGVADQVVQNAPESCKVRVICEGKEVNEQMMMMMSPSPSPQIITTTANSANNDSSVNTKENDSVLCVCFKPKFK 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04888 268 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 10 267 - -
Tsu04g04888 268 CDD STK_N 60 217 - -
Tsu04g04888 268 Coils Coil 40 60 - -
Tsu04g04888 268 Gene3D HUPs 49 226 IPR014729 -
Tsu04g04888 268 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 61 211 - -
Tsu04g04888 268 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 10 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04888 Tsu-Chr4 55764149 55765759 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04888 63 218 Plant U-box Gene Family AT5G57035 32.484 8.75e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04888 - - gmx:100527773 293.123