Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04883 ATGAATGCAGGAGGGGCACTGAAGCTATCAGTCTCTGAGATGAACACGAGGCAGCAAGTGGGAGAACAGAACAACAATCACTCATCAGCAGGAACAGAACAAGACAATGAATGCACTGTGAGGGAACAAGACCGTTTCATGCCAATTGCAAATGTAATAAGGATCATGCGAAAGATTCTACCACCACATGCAAAAATCTCTGACGATGCAAAAGAAACAATCCAAGAGTGTGTCTCTGAGTACATCAGCTTCATAACTGGAGAAGCAAATGAACGTTGTCAAAGAGAGCAAAGGAAAACAATAACTGCTGAAGATGTGCTTTGGGCTATGAGTAAGCTTGGTTTTGATGATTACATTGAACCTCTTACAATGTATCTTCATCGTTATCGCGAGCTTGAAGGTGATCGTACTTCAATGAGAGTTGAACCTTTGGGAAAGAGAGGTATGGATCAATATGGAAATGCTTTAGGGGGTTTTGTACCACAGTTTCATATTGGTCATCCAAATGGAGGGTATTATGGTAATGCAACTTATATGATGAGGGATGGTAATAACAATAGTGGTGCTGGAGGTTCTTCTCATTCTCAGGCTACACATGCTGAAGCCAATggtcatcatcatcaccatcaatataaataa 639 0.3959 MNAGGALKLSVSEMNTRQQVGEQNNNHSSAGTEQDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRVEPLGKRGMDQYGNALGGFVPQFHIGHPNGGYYGNATYMMRDGNNNSGAGGSSHSQATHAEANGHHHHHQYK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04883 212 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 13 209 - -
Tsu04g04883 212 ProSitePatterns NF-YB/HAP3 subunit signature. 77 93 IPR003956 GO:0005634|GO:0006355|GO:0043565
Tsu04g04883 212 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 46 110 IPR003958 -
Tsu04g04883 212 MobiDBLite consensus disorder prediction 184 199 - -
Tsu04g04883 212 MobiDBLite consensus disorder prediction 16 39 - -
Tsu04g04883 212 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 209 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tsu04g04883 212 Gene3D Histone, subunit A 33 153 IPR009072 GO:0046982
Tsu04g04883 212 SUPERFAMILY Histone-fold 43 140 IPR009072 GO:0046982
Tsu04g04883 212 MobiDBLite consensus disorder prediction 184 212 - -
Tsu04g04883 212 MobiDBLite consensus disorder prediction 16 36 - -
Tsu04g04883 212 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Tsu04g04883 212 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Tsu04g04883 212 PRINTS CCAAT-binding transcription factor subunit A signature 112 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04883 Tsu-Chr4 55722287 55722925 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04883 4 173 CCAAT-HAP3 Transcription Factor Family AT5G47670 63.043 2.51e-70 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tsu04g04883 CBFD_NFYB_HMF 5.8e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04883 K08065 - gmx:100800011 266.159