Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04881 ATggctgaatcagatgatgaatcaGGTGGTCAAGCTTCAGGGAGCAGAGAACTACTGCAAGAAAGGCTCCTTCCCATAGCAAACGTAGGAAGGATCATGAAGAAAGCGTTACCGGCGAAAGCGAAGATATCAAAGGAATCAAAAGAAACTATGCAAGAGTGTGTATCAGAATTCATAAGTTTCATAACAGGTGAAGCATCTGAAAAGTGtcagaaagaaaaaaggaagaCAATAAACGGTGATGATCTTTTGTGGGCTATGACTACACTTGGTTTTGAAGAATATGCTGAGCCTCTTAAGGGTTATCTTCATAGGTATAGGGAGATTGAAGGTGACAAGAATTTTTCTATGAGTATGATTGGTAAGGAGCAGCAAGGTAGTAGTAGTGCTGATAATCGATTCTTCCGAGGCTGA 414 0.3696 MAESDDESGGQASGSRELLQERLLPIANVGRIMKKALPAKAKISKESKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLLWAMTTLGFEEYAEPLKGYLHRYREIEGDKNFSMSMIGKEQQGSSSADNRFFRG 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04881 137 Gene3D Histone, subunit A 12 133 IPR009072 GO:0046982
Tsu04g04881 137 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Tsu04g04881 137 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Tsu04g04881 137 SUPERFAMILY Histone-fold 20 116 IPR009072 GO:0046982
Tsu04g04881 137 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Tsu04g04881 137 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Tsu04g04881 137 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Tsu04g04881 137 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 129 - -
Tsu04g04881 137 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 129 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04881 Tsu-Chr4 55707537 55708132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04881 1 114 CCAAT-HAP3 Transcription Factor Family AT4G14540 74.576 8.62e-61 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tsu04g04881 CBFD_NFYB_HMF 2.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04881 K08065 - gmx:100778034 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04881 04 55707537 55708132 Tsu08g03397 08 51868844 51869573 PCT