Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04877 ATGAAAATACTGTTTAATGATTTTGACATTTTACCTTTACAATTCATGTTGTCTTTCTGTCTGTCTGTTTattattcatcatcatcacatgtGTTGTTTCGTCAGGTTCCTGTTGTTCCTTTACAAAGACCTGATGAGATGCATCATTCATGGTCACAAACTACTTCTGCTTCTGGATATGAAGATATCTCCACTCAACACACTATTCCTACTATGATTACTTGGTCTTATGGTGCTAAACTCATTTCTGTTCAAGGTTCCTGGGATAATTGGAAATCAAGaaCTCCTTTGCAGAGATCAGGGAAAGATTTCGCAATAATGAAGGTGCTGCCGTCTGGTGTTTACCAGTATAGATTTATTGTCGATGGAAGATTCTGTTACGACCCTGAGTTACCTTGGTCCAAAGATGAGGCTGGCAATTTTTACAACATATTGGACTTAAAGGATTATGTTCCTGAAGACATTGGAAGCATTTCTGGTTTTGAACCTCCTCAATCACCAACCTCAAGTTATGACAATTTACCACTTAGTTCTGAAGATTATGCAAAGGAGCCACCATTAGTTCCTCCACACTTAGCAATGACACTGCTAAATGTACCTACGACAAATTTGGAAATCGATCCTCCTATGCCAAGACCTCAACATGGAGTGCTCAATCATCTTTACATGCAGAAAGAAAAGAGTAGTACGAGCAGTACGGGCAGTAAGAGCAGTCCTTCAGTGGTTGCCCTTGGTACAACTCACAGATACCAGGCCAAATATGTCACTGCGGTGCTTTACAAGCCTTTGCAGAAGAGGACTTAA 804 0.3918 MKILFNDFDILPLQFMLSFCLSVYYSSSSHVLFRQVPVVPLQRPDEMHHSWSQTTSASGYEDISTQHTIPTMITWSYGAKLISVQGSWDNWKSRTPLQRSGKDFAIMKVLPSGVYQYRFIVDGRFCYDPELPWSKDEAGNFYNILDLKDYVPEDIGSISGFEPPQSPTSSYDNLPLSSEDYAKEPPLVPPHLAMTLLNVPTTNLEIDPPMPRPQHGVLNHLYMQKEKSSTSSTGSKSSPSVVALGTTHRYQAKYVTAVLYKPLQKRT 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04877 267 Gene3D Immunoglobulins 62 151 IPR013783 -
Tsu04g04877 267 SUPERFAMILY E set domains 68 154 IPR014756 -
Tsu04g04877 267 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 182 262 IPR006828 GO:0005515
Tsu04g04877 267 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 27 264 IPR043554 -
Tsu04g04877 267 SUPERFAMILY AMPKBI-like 151 263 IPR037256 -
Tsu04g04877 267 SMART AMPKBI_2 164 263 IPR006828 GO:0005515
Tsu04g04877 267 CDD E_set_AMPKbeta_like_N 70 146 - -
Tsu04g04877 267 Pfam Glycogen recognition site of AMP-activated protein kinase 69 148 IPR032640 -
Tsu04g04877 267 Gene3D - 159 263 - -
Tsu04g04877 267 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2 27 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04877 Tsu-Chr4 55681641 55684690 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04877 K07199 - jre:109018711 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04877 04 55681641 55684690 Tsu08g03398 08 51880804 51885019 PCT