Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04873 ATGGGGTTTTGGAATTTGGTTGAGCTAGAGAAAAGGTGTCCAAGAACAGTGTCATGTGCTGACATTCTCACTGCTGCTGCAAGAGATGCAACAATTTTAGCTGGAGGACCATTTTGGGAAGTTCCATTCGGCCGAAAAGACGGCAAGATTTCATTGGCCAAAGAAGCAAATTTGGTTCCACAAGGACATGAAAACATCACAGGTTTGATTGGTTTTTTTCAAGAAAGAGGACTTGACATGCTTGATTTGGTTACTCTCTCAGGTTCACACACAATTGGAAGAAGCACTTGTTATTCTGTTATGAATAGGATTTACAATTTCAACGGAACTGGTAAACCTGATCCTTCACTTAACATGTATTACTTGAAGTTGTTGAGGAAAAGATGTAAAAAAGATTTGGATTTGGTGCACCTTGATGTTATAACTCCTAGGACTTTTGACACAACATATTACACAAACCTTAAGAGGAAAGTTGGTTTGTTGTCAACAGATCAATTATTGTTTTCAGATGAAAGGACAAGTCCTTTTGTGGAAGCATTTGCAACACAAGCTTTTCTTTTTACTAGTCAATTTGCTATGTCAATGGTGAAACTTGGGAATGTTCAAGTTTTGACTAGGTCTAATGAAGGTGAAATCAGAGTCAACTGCAATTATGTTAATcatgtttga 669 0.3692 MGFWNLVELEKRCPRTVSCADILTAAARDATILAGGPFWEVPFGRKDGKISLAKEANLVPQGHENITGLIGFFQERGLDMLDLVTLSGSHTIGRSTCYSVMNRIYNFNGTGKPDPSLNMYYLKLLRKRCKKDLDLVHLDVITPRTFDTTYYTNLKRKVGLLSTDQLLFSDERTSPFVEAFATQAFLFTSQFAMSMVKLGNVQVLTRSNEGEIRVNCNYVNHV 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04873 222 ProSitePatterns Peroxidases proximal heme-ligand signature. 82 92 IPR019793 -
Tsu04g04873 222 PRINTS Haem peroxidase superfamily signature 17 34 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu04g04873 222 PRINTS Haem peroxidase superfamily signature 139 154 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu04g04873 222 PRINTS Haem peroxidase superfamily signature 35 47 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu04g04873 222 PRINTS Haem peroxidase superfamily signature 82 97 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu04g04873 222 Pfam Peroxidase 8 182 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu04g04873 222 Gene3D - 8 220 - -
Tsu04g04873 222 CDD secretory_peroxidase 8 219 IPR033905 GO:0004601|GO:0042744
Tsu04g04873 222 Gene3D Peroxidase, domain 2 60 198 - -
Tsu04g04873 222 PANTHER PEROXIDASE 8 219 - -
Tsu04g04873 222 PANTHER PEROXIDASE 25-RELATED 8 219 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g04873 222 SUPERFAMILY Heme-dependent peroxidases 8 220 IPR010255 GO:0004601|GO:0006979|GO:0020037
Tsu04g04873 222 ProSiteProfiles Plant heme peroxidase family profile. 9 220 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu04g04873 222 PRINTS Plant peroxidase signature 153 170 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g04873 222 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g04873 222 PRINTS Plant peroxidase signature 81 93 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g04873 222 PRINTS Plant peroxidase signature 193 206 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g04873 222 PRINTS Plant peroxidase signature 35 50 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g04873 222 PRINTS Plant peroxidase signature 16 26 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04873 Tsu-Chr4 55650354 55651922 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04873 8 220 Peroxidase AT1G30870 48.837 3.53e-70 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04873 K00430 - gmx:100792775 374.015