LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g04871	ATGGGCAGTGACGAGGCTCAACAGTTATTGCTTTCAGAGTCAAGGGAACACTCTCATCTCAATGAGAAGAGTGACCTTCTTCAGAGAAGAAGACCGCGGCGTGGCGGCATTTCAGTTCCGCAAGAACAGAATGGGGTCCTCCAAACCCCTTTACTTCCTCAATGTATAGATGAAAAACAAGCAGAATTCCATTTCAGGCCAGTGCTTTTGTGTTTAGCAGCTTACCTAGGTACAGGTACCTTATGTTTCTTTCTCACAAGTTACCAAATTCAGGGCATAAAAACAAATGGATTTCTTGATGCCCTTTATTTCTGTGTTGTGACAATGACTACTGTTGGATATGGAGATCTTGTTCCTAATAGCACTATAGCAAAATTACTTGCTTGCATTTATGTCTTCACTGGTATGGCTCTTGGTGGCTTAATTCTTAGCAAAGCAGCAGATTACATTGTTGAGAAAGAAGAAATATTTGTTGTTAAAGCCATGCACAATGCTGAAAAATTTGGTCCAGAAGAGATTTCTAAAGAACTTGGAACTAATAAAAGCAAATACAAGTTTGTGCTAGCAGCATCTACTTTTCTTGTGCTCATGATTGTAGGGACTCTTTTTCtgtattttattgaaaaactagATTTTGTGGATGCACTTTATTGTGTTTGTTCCACAGTCACTACTTTAGGTTATGGAGATAAGAGCTTCTCAACTGTTGCTGGTAGGACTTTTGCTGTGTTTTGGATATTGAGCAGCACCATCTGCTTGGCTCAGTCTTTTGCATATCTCGCTGAACTTTATACTGAAGATAGACAAAGATCACTTGTAAAAATGGTTCTTGCACGAAAATTGTCACTCCGTGATCTCGAGGCAGCAGATCTTGATGGAGACAAAGCTGTCAGTGCTGCAGAGTTCGTTGTATACAAGTTGAAGGAAATGGGAAAGATCAACCAAGAAGATATCACAGCTGTGATGGAGATTTTTAGAAAACTAGACTATGATCACTCAGGAACTCTGACTGAAGCGGATATCAGAAATTCTGAATTCTGA	1041	0.3919	MGSDEAQQLLLSESREHSHLNEKSDLLQRRRPRRGGISVPQEQNGVLQTPLLPQCIDEKQAEFHFRPVLLCLAAYLGTGTLCFFLTSYQIQGIKTNGFLDALYFCVVTMTTVGYGDLVPNSTIAKLLACIYVFTGMALGGLILSKAADYIVEKEEIFVVKAMHNAEKFGPEEISKELGTNKSKYKFVLAASTFLVLMIVGTLFLYFIEKLDFVDALYCVCSTVTTLGYGDKSFSTVAGRTFAVFWILSSTICLAQSFAYLAELYTEDRQRSLVKMVLARKLSLRDLEAADLDGDKAVSAAEFVVYKLKEMGKINQEDITAVMEIFRKLDYDHSGTLTEADIRNSEF	346

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g04871	346	ProSitePatterns	EF-hand calcium-binding domain.	329	341	IPR018247	-
	Tsu04g04871	346	Gene3D	-	286	344	-	-
	Tsu04g04871	346	SUPERFAMILY	EF-hand	286	343	IPR011992	-
	Tsu04g04871	346	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	21	341	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Tsu04g04871	346	SUPERFAMILY	Voltage-gated potassium channels	64	152	-	-
	Tsu04g04871	346	Gene3D	-	170	273	-	-
	Tsu04g04871	346	SUPERFAMILY	Voltage-gated potassium channels	178	279	-	-
	Tsu04g04871	346	Gene3D	-	62	156	-	-
	Tsu04g04871	346	PRINTS	Two pore domain K+ channel signature	107	135	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Tsu04g04871	346	PRINTS	Two pore domain K+ channel signature	224	233	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Tsu04g04871	346	PANTHER	OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN	21	341	-	-
	Tsu04g04871	346	Pfam	Ion channel	193	264	IPR013099	-
	Tsu04g04871	346	Pfam	Ion channel	71	151	IPR013099	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g04871	Tsu-Chr4	55640289	55641580	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu04g04871	64	341	Ion Channels	AT5G55630	61.871	4.63e-123	357

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g04871	K05389		-	gmx:100799492	508.834