Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04856 ATGACTCCGATCTTAACCCCTAtccttcaacaacaacaacaacaatatcgTTCATCGTCCAAACGTAAATTAAACGATGACGATGAAAACAACGTGTCAGATGATGACTTAGTCTATGTTAGAATGAGGAaacaagaaacaacaaaaacagcAGTTAATTCATGGAGCGGTGGTGGTGGTTGTAAGGGTGGTTTATTGAAGAAAAATTcagaaattcatttttttattagaatgaTGCCAAAAGGAAAAAGCGTTGTTATACACGCTTATGCAGAAGATACTGTGAAATCAATTCTTGAACGGTTAGTAGAATTGAATAGTATACCTATTTTTGAACAAAGGTTGATTTTTAGAGGTAGACAGCTTCAGTGGGAACAAACTGTTGCTCAGTGCGGTATACAAAAAGACTGTAATGTTGAACATGTTGGTCGAATGCGGAGTACAGAACATCCTCAAGCTTGGCAAGTTGTTAATGATATGGTTTCTGTTGTTTATGATCTTTGTCGTCAAGTAAATGTTCAGGAACCGTCTAAAACTGTTAAGAGTCTTCTCACTAGTTATATCAGCTTGGCTCTCACTCCTAAACCCAAACTTGATGCTGATTCTGCTACCGGCTATTTCGGGATTTTCATGAATTCCTCTGCCATTTCGGTTCTTGTTACTCTCTATGTTTCACCTTTTAAGGGTAACAAGGATACTGCTGATAGTTGTATTAGGCATTTTTTGAATTGTTGTAGGACTTCATTGTCTAAGACATTTTATACTCAGGCTGCGCGTGTGGCGTTGGAGTTTTGTAAATTGCTTAGCAGAGTGGGGACTCATGATCCTTTGTATCTTTTTTGTCGGAGTAGTTTGGGGGGTTTTCTAGAAGATGCTGAAATTTCACTTGCTTCTTCTGAGGATCAGAACTTTAAAGGTTTGGTATTGGTACAAGATTTGTTTCCGTTTGTTCGCGAACTTGCTGATAGTTTGTTGACGAATTTGGAGTCGAGCATTGATTCTCCTTCCGTTGCTTGTCCTTTGTTGAGCAATATTGGGGATTTTACTGCATTTTTAGTCCCTGTGAGGAATGGAATTGAGCAACATCAGGCTCTCCGGGGTGGTGTTTCTTACCACAATCTCGACAGCAACTGCTTGGTTGTTAAAGAGATTGAATACCTTCATCTGTTGTACAATCAGTTGTTGTCCAAAATTGATACTTGCCTTCAAAAAATGGAGAAGAGATTCGTTGACAAGGAAATGGTGCATGaggaaaattattttttccccGCTTGTTCTCTCTATCTTTCCCTTTTGAAGGAGTTGCATAAGATTTCTAAGCTTTATGATGGCGCTCCAGAAAAGCTCAGGGGTGTTTTGATGCGTCAAAAGACTGTGATGTGTCTGATGGTCGTTAAATATGCAAAGAGGGTCGACGAGCATCAGTGGATTCTCGAGCACAAGAACGTCACTAATTTTGAGACTAGGAGGCATCTGGCCATGATGATATTCCCGGAGGTAAAAGAAGACTATGAGGAGCTACATGAGATGCTCATTGACAGGTCTCAGTTGTTAACTGAATCTTTCGAATACATTGCACGGGCTGATCCCGAATCACTGCGTTCTGGACTGTTTATGGAATTCAAAAACGAGGAAGCCACTGGCCCTGGTGTGCTGAGGGAGTGGTTCCTTTTGGTTTGTCAAGCAATATTCAATCAGGCAAATGCCCTTTTTGTTGCCTGCCCAAACGATCGAACAAGGTTTCTCCCCAATTCTGCTTCCAAGGTACATCCTCTGCATCTTGAGTACTTCCGCTTCTGTGGCCGAGTTATTGCATTAGCTTTGATGCATAAGGTGCAAGTAGGTATTGTTTTTGATCGCACGTTTTTCTTGCAATTGGCTGGAAATCCTATTACTTTAGAAGACATAAGGGATGCAGATCCTGACCTGTATAAAAGTTGCAAGCAGATATTGGACATGGATTCTGATTTCATTGATTCAGATGCATTAGGACTGACGTTTGTTAGAGAAGTGGAGGAATTAGGACACAGGAAAGCAGTCCAGCTCTGTCCTGGTGGAAAAAACATTGTAGTTAATAGTAAGAACAGGGTGAAGTATGTTGATCTTCTTATAAAGGAACGTTTTGTAACATCCATATCTGAGCAGGTGTCACACTTTGCCAAAGGTTTTGCTGATATTCTATCATGTTCAAAGCTCCAGCAGTTCTTCTTTCGAGGTTTAGAGCCTGAAGATCTTGATTATATGCTGCGTGGGAGTGAAGATGACATTTCCGTCGAAGATTGGAAAGCACACACCGAATATAATGGCTACAAAGAGACAGATATTCAGATATCTTGGTTTTGGGAGATTGTGGGGAGAATGACAGCTGAAGAAAAGAAggttcttcttttcttttggacATCTGTGAAATATTTACCAGTTGAAGGCTTCTGTGGTTTGGGTTCCCGTCTCCACATTTACAAGTCCCATGAACCTTGCAATCGCCTTCCTTCATCTCATACATGCTTTCACCGGCTGTGTTTCCCAGTTTATTCATCTATGCCTGTCATGGAAGCTCGTCTTAAAGTCATTACTCAAGAACATATAGGCAGTAGTTTTGGTACTTGGTGA 2610 0.3923 MTPILTPILQQQQQQYRSSSKRKLNDDDENNVSDDDLVYVRMRKQETTKTAVNSWSGGGGCKGGLLKKNSEIHFFIRMMPKGKSVVIHAYAEDTVKSILERLVELNSIPIFEQRLIFRGRQLQWEQTVAQCGIQKDCNVEHVGRMRSTEHPQAWQVVNDMVSVVYDLCRQVNVQEPSKTVKSLLTSYISLALTPKPKLDADSATGYFGIFMNSSAISVLVTLYVSPFKGNKDTADSCIRHFLNCCRTSLSKTFYTQAARVALEFCKLLSRVGTHDPLYLFCRSSLGGFLEDAEISLASSEDQNFKGLVLVQDLFPFVRELADSLLTNLESSIDSPSVACPLLSNIGDFTAFLVPVRNGIEQHQALRGGVSYHNLDSNCLVVKEIEYLHLLYNQLLSKIDTCLQKMEKRFVDKEMVHEENYFFPACSLYLSLLKELHKISKLYDGAPEKLRGVLMRQKTVMCLMVVKYAKRVDEHQWILEHKNVTNFETRRHLAMMIFPEVKEDYEELHEMLIDRSQLLTESFEYIARADPESLRSGLFMEFKNEEATGPGVLREWFLLVCQAIFNQANALFVACPNDRTRFLPNSASKVHPLHLEYFRFCGRVIALALMHKVQVGIVFDRTFFLQLAGNPITLEDIRDADPDLYKSCKQILDMDSDFIDSDALGLTFVREVEELGHRKAVQLCPGGKNIVVNSKNRVKYVDLLIKERFVTSISEQVSHFAKGFADILSCSKLQQFFFRGLEPEDLDYMLRGSEDDISVEDWKAHTEYNGYKETDIQISWFWEIVGRMTAEEKKVLLFFWTSVKYLPVEGFCGLGSRLHIYKSHEPCNRLPSSHTCFHRLCFPVYSSMPVMEARLKVITQEHIGSSFGTW 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04856 869 MobiDBLite consensus disorder prediction 10 32 - -
Tsu04g04856 869 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 67 867 - -
Tsu04g04856 869 SMART hect_3 527 867 IPR000569 GO:0004842
Tsu04g04856 869 SUPERFAMILY Hect, E3 ligase catalytic domain 504 855 IPR035983 GO:0004842
Tsu04g04856 869 SMART ubq_7 72 144 IPR000626 GO:0005515
Tsu04g04856 869 Pfam Ubiquitin family 75 146 IPR000626 GO:0005515
Tsu04g04856 869 Pfam HECT-domain (ubiquitin-transferase) 558 861 IPR000569 GO:0004842
Tsu04g04856 869 Gene3D - 66 161 - -
Tsu04g04856 869 ProSiteProfiles Ubiquitin domain profile. 72 148 IPR000626 GO:0005515
Tsu04g04856 869 CDD HECTc 508 867 IPR000569 GO:0004842
Tsu04g04856 869 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 67 867 - -
Tsu04g04856 869 Gene3D Hect, E3 ligase catalytic domains 509 735 - -
Tsu04g04856 869 ProSiteProfiles HECT domain profile. 529 869 IPR000569 GO:0004842
Tsu04g04856 869 SUPERFAMILY Ubiquitin-like 66 154 IPR029071 -
Tsu04g04856 869 Gene3D Hect, E3 ligase catalytic domain 752 868 - -
Tsu04g04856 869 Gene3D Hect, E3 ligase catalytic domain 629 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04856 Tsu-Chr4 55533719 55540017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04856 72 146 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.667 1.11e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04856 - - gmx:100789233 1196.03