Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04842 ATGAACTTTTCTAGAGCTTCAATGGCAGGTTCATGGTTCAACAAGCTTCGCCTGCGAAGGTCTAAGAGTAATAAACCTTTACCAGAGccttcttcttcgtcttctAAGGCTCGGTTAAATTCTGATGCAGACAACATGGAAAGAAAAAGATTTGATAGCTTAGAATCATGGTCCATGATATTGGACTCCGAGAATGTCGAAACATGGGAAGCTTCGAAGGAGGATCAGGAAGAATGGACTGCTGATCTTTCTCAGCTTTTCATAGGTAACAAGTTTGCATCCGGTGCTCACAGTCGGATTTACCGTGGAATTTATAAGCAAAGAGCTGTTGCTGTTAAAATGGTGAGGATTCCTAATCAGAATGAAGAGAGAAGAACATTGCTAGAACAACAATTCAAATCTGAAGTTGCTTTACTCTCACGTCTCTTTCATCCTAACATAGTGCAGTTTATTGCAGCATGTAAAAAACCACCTGTGTACTGCATAATAACAGAATACATGTCACAAGGAACTCTGAGGATGTATCTGAACAAGAAAGAGCCTTACTCACTTTCAATAGAAACTGTACTAAGGTTAGCACTTGACATATCAAGAGGTATGGAGTATCTTCATTCTCAAGGTGTGATTCATAGAGACCTCAAATCAAATAACTTGCTTCTCAATGATGAGATGAGGGTTAAGGTAGCAGATTTCGGGACATCGTGTCTTGAAACGCGATGCCGAGAAACAAAAGGAAACATGGGAACTTATCGTTGGATGGCGCCTGAGATGATTAAAGAAAAACCATATACTCGTAAAGTTGATGTGTATAGTTTTGGAATTGTGCTTTGGGAACTCACAACTGCTTTGCTTCCTTTTCAAGGAATGACTCCAGTACAAGCTGCTTTTGCAGTTGCTGAGAAGAATGAAAGGCCTCCACTGCCTGCAAGTTGTCAACCAGCACTTGCGCATCTAATAAAGCGATGTTGGTCAGCAAATCCTTCAAAAAGGCCAGATTTCAGTGATATTGTGTCTACTCTTGAGAGGTATGATGAATGTGTAAAGGAAGGTCTTCCTCTAACTCATCATTCAGGACTAGTCACCAAAAACTTCATTATCGAACGCTTAAAAGGCTGCGTTTCCATGAGTTCCTCCATACCTGTAAATGCTTAA 1152 0.3984 MNFSRASMAGSWFNKLRLRRSKSNKPLPEPSSSSSKARLNSDADNMERKRFDSLESWSMILDSENVETWEASKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQNEERRTLLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSIETVLRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWSANPSKRPDFSDIVSTLERYDECVKEGLPLTHHSGLVTKNFIIERLKGCVSMSSSIPVNA 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04842 383 CDD STKc_MAP3K-like 93 340 - -
Tsu04g04842 383 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 19 371 - -
Tsu04g04842 383 MobiDBLite consensus disorder prediction 25 40 - -
Tsu04g04842 383 SUPERFAMILY Protein kinase-like (PK-like) 64 340 IPR011009 -
Tsu04g04842 383 PRINTS Tyrosine kinase catalytic domain signature 248 258 IPR001245 GO:0004672|GO:0006468
Tsu04g04842 383 PRINTS Tyrosine kinase catalytic domain signature 202 220 IPR001245 GO:0004672|GO:0006468
Tsu04g04842 383 PRINTS Tyrosine kinase catalytic domain signature 311 333 IPR001245 GO:0004672|GO:0006468
Tsu04g04842 383 PRINTS Tyrosine kinase catalytic domain signature 267 289 IPR001245 GO:0004672|GO:0006468
Tsu04g04842 383 PRINTS Tyrosine kinase catalytic domain signature 164 177 IPR001245 GO:0004672|GO:0006468
Tsu04g04842 383 ProSiteProfiles Protein kinase domain profile. 86 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04842 383 Gene3D Transferase(Phosphotransferase) domain 1 169 357 - -
Tsu04g04842 383 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 19 371 - -
Tsu04g04842 383 Pfam Protein tyrosine and serine/threonine kinase 88 340 IPR001245 GO:0004672|GO:0006468
Tsu04g04842 383 Gene3D Phosphorylase Kinase; domain 1 75 168 - -
Tsu04g04842 383 SMART serkin_6 86 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04842 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Tsu04g04842 383 MobiDBLite consensus disorder prediction 17 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04842 Tsu-Chr4 55448610 55451376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04842 8 383 MAP Kinase Kinase Kinase AT1G62400 82.821 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Tsu04g04842 PK_Tyr_Ser-Thr 1.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04842 - - gmx:100799437 699.893