Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04838 ATGGGGAAATCAGGCGGTAGAAGAAAGAAGGGTGGTGCTGTTGTTGTTGACAACAATTCAGCTTCTGCACAAATTCCAAATGGTGCTGTTGAATTggattcatcaatttttttgaaaaaggcacatgaaatgaaagaagaagGGAATAGAAGATTTCAGAGTAAGGATTATGCTGGTGCTCTTGAACACTATGAGAATGCTCTTCGATTGACACCGAAAACTCATCCTGATAGGGCTGTTTTTCATAGCAATAGGGCTGCTTGTTTGATGCAAATGAAACCTATTGATTATGAATCTGTTATTTCTGAGTGTACTTTGGCTCTTCAGGTTCAGCCTCAATTTGTTCGGGCTCTTCTTCGTAGGGCTCGGGCTTTTGAGGCTGTTGGTAAGTATGAATTGGCTGTGCAAGATGTGCAGTTGTTGTTGGCTTCTGATCCTAATCATAAGGATGCTTTGGATATTGCTCAGAGGTTGAGGGCTGCTTTTGGGCATCGTCAGGAAGCTCAGCAGGATCTCCACAGTCGACCTTCTCCTGCTGCACTTGGTGCTTCTGCTGTTCGTGGTGCTCCTATTGCTGGGTTAGGTCCGTGTTTGCCAGCACGGCCTGCGTCGAAGAAGGGAGCAAATTCTGCTGTTGGGTCGGTTGTTTCTCCTAATAGTAAGATAGACAAGTCTCAAAATGTTTTACTGTCAAATGAAAATGGTCTTGAGACCAAGACCCAGTCGCAAAAAGTTGTATTGAAGCCTTTTAACAATGGTTCTGCAGTGCAACCTAACAGGAAAAATGAGAACCAGAAGGATGTTCACAGGCAGATTTCGGAGGTTGCGATTCGGTGTAGACCATTGAAGCTTGTTTATGATCATGACATTAGGCTTGCCCAGATGCCGGTGAACTGCAGTTTCAGAGTACTGAGAGATGTAGTAAGCAAAAGATTTCCCTCGTCAAATTCAGTTCTAATCAAGTACAAGGATGGTGACGGTGATTTGGTTACTATTACATCTACCGATGAACTCAGATTGGCAGAGTCTTTTGTTGATAGCTATCTGGTGAAAGAACCTGAATCAGATAAAAGTGATTCCATTTCGGTGTTGAGACTACATATTGTTGAAGTTAGTCCGGAGCAGGAGCCACCTttggaagaagaggaagaaaaacTTGTTGAAGAGAAACTAGTTGAGAATGAAGGGACCAAGGGAGACGAGAGTGGATCTCATTCTTCCCTTGGTGAATCTGTCCCTGAAGTTACAGAAGTTACTGAACTTACAGAAGTTACTGAAGTTCCTGACACTGATGTTGATAAGATAATAAAGAAGGATGCTTCAAAGGAAAAGACGGGTGCCACAGGAGAAAATGAATGCAAAGAAGTGGAGATGGATGATTGGTTGTTTGAATTTGCTCAGCTTTTCCGCTCACATGTTGGTATTGACCCAGATGCTCATATTGACTTGCATGAGCTTGGGATGGAGCTTTGTTCAGAGGCACTTGAAGAAACAGTAACAAGTGAGGAGGCTCAGGAATTATTTGACAAGGCTGCTTCAAAATTCCAGGAGGTGGCAGCTTTGGCATTCTTCAACTGGGGTAATGTTCACATGTGTGCTGCTAGGAAGCGGATTCCTCTAGATGAGTCAGCTGGGAAAGACGTAGTGGCGGAACAGCTTCAAGTGGCTTATGACTGGGTCAAAGAAAAGTATTCTTTGGCAAGAGAGAAATATGAGGAAGCACTCTTGATCAAACCAGATTTCTATGAGGGACTTTTGGCTCTGGGCCAGCAACAATTTGAAATGGCCAAGCTCCATTGGTCTTTTGCAATTGCTAAGAAGATAGATCTTACAAGCTGGGATCCAACGGAAACTCTTCAACTGTTTAGCAGTGCGGAGGAGAAGATGAAATCTGCAACAGATATGTGGGAGAAGTTGGAGGAACAGAGAGCAAAGGAGCTAAAGGACCCAAATGCAACCAAGAAAGAAGAAGTattgagaagaagaaagaaacagGGAAGTGCTGCTGAAGGCGAGTCTTCTAGTGCTGGCGGTCAAGGTGAGATATCTCCCGAAGAAGCTGCTGAACAAGCAGTGGTCATGAGATCACAGATTCATCTCTTCTGGGGCAATATGCTTTTCGAAAAATCCCAAGTTGAATGCAAATTAGGAATGGATGGTTGGAAGAAAAATCTAGATGCTGCAACTGAGCGCTTTAAGCTTGCAGGAGCTTCCGAGGCAGATATTTCGATGGTTCTTAAGAATCATTGCTCAAATGGAGATGCAAAaggtgatgataaaaaagtccAGAGCCCACAACCCAACAAGACTGATGAACCAGAGATCAATAAGACCAATCAAGTATGA 2346 0.4186 MGKSGGRRKKGGAVVVDNNSASAQIPNGAVELDSSIFLKKAHEMKEEGNRRFQSKDYAGALEHYENALRLTPKTHPDRAVFHSNRAACLMQMKPIDYESVISECTLALQVQPQFVRALLRRARAFEAVGKYELAVQDVQLLLASDPNHKDALDIAQRLRAAFGHRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPASKKGANSAVGSVVSPNSKIDKSQNVLLSNENGLETKTQSQKVVLKPFNNGSAVQPNRKNENQKDVHRQISEVAIRCRPLKLVYDHDIRLAQMPVNCSFRVLRDVVSKRFPSSNSVLIKYKDGDGDLVTITSTDELRLAESFVDSYLVKEPESDKSDSISVLRLHIVEVSPEQEPPLEEEEEKLVEEKLVENEGTKGDESGSHSSLGESVPEVTEVTELTEVTEVPDTDVDKIIKKDASKEKTGATGENECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQELFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKDVVAEQLQVAYDWVKEKYSLAREKYEEALLIKPDFYEGLLALGQQQFEMAKLHWSFAIAKKIDLTSWDPTETLQLFSSAEEKMKSATDMWEKLEEQRAKELKDPNATKKEEVLRRRKKQGSAAEGESSSAGGQGEISPEEAAEQAVVMRSQIHLFWGNMLFEKSQVECKLGMDGWKKNLDAATERFKLAGASEADISMVLKNHCSNGDAKGDDKKVQSPQPNKTDEPEINKTNQV 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04838 781 Gene3D - 281 349 - -
Tsu04g04838 781 CDD PB1 282 368 - -
Tsu04g04838 781 MobiDBLite consensus disorder prediction 394 427 - -
Tsu04g04838 781 SUPERFAMILY TPR-like 473 598 IPR011990 GO:0005515
Tsu04g04838 781 MobiDBLite consensus disorder prediction 749 781 - -
Tsu04g04838 781 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Tsu04g04838 781 ProSiteProfiles PB1 domain profile. 279 371 IPR000270 GO:0005515
Tsu04g04838 781 PANTHER - 1 766 - -
Tsu04g04838 781 PANTHER PROTEIN CLMP1 1 766 IPR044517 -
Tsu04g04838 781 SMART tpr_5 41 74 IPR019734 GO:0005515
Tsu04g04838 781 SMART tpr_5 79 114 IPR019734 GO:0005515
Tsu04g04838 781 SMART tpr_5 115 148 IPR019734 GO:0005515
Tsu04g04838 781 Coils Coil 622 642 - -
Tsu04g04838 781 MobiDBLite consensus disorder prediction 752 767 - -
Tsu04g04838 781 MobiDBLite consensus disorder prediction 642 688 - -
Tsu04g04838 781 Gene3D Tetratricopeptide repeat domain 38 167 IPR011990 GO:0005515
Tsu04g04838 781 SMART PB1_new 279 371 IPR000270 GO:0005515
Tsu04g04838 781 SUPERFAMILY TPR-like 38 172 IPR011990 GO:0005515
Tsu04g04838 781 MobiDBLite consensus disorder prediction 642 668 - -
Tsu04g04838 781 SUPERFAMILY CAD & PB1 domains 280 343 - -
Tsu04g04838 781 Pfam PB1 domain 281 370 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04838 Tsu-Chr4 55422299 55425265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04838 41 159 Calmodulin-binding Proteins AT3G25230 30.000 1.29e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04838 - - gmx:100786963 1154.81