Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04836 ATGAGTCAACTCGGACTCATATTGCAGGAATCGCTACGTCCTCAAAGAGAAGCAAGAACAATTCTCGGTTTATTAACTGAACAAATGGACGGTTTAGATACAGGAACAACAAGAAGGCGTAGTCTTAAAGAACGGCTCAGATTCACCGGAATGGGTTGCTGTGGAGCCACCTGGGTTTTCCGTCCAATTATCAGGCACCAACAACAAGGAGATGAGAGAGTAACAGAAAGAGAAGCTACGGAACAGGTTCAAGATCCGAACCCGGTTGAACCGGAATGTGTAAACCCGGGATCGTCTGGTTCTGGAATGAATCTAGCGACGGCGTTGGCGGCGGAGCGTCAGATGAGGGGATCGGAGGAGACGAGTAGCGGAGAAGGAGGGACGACGTGGAGAGTATCGTTGATGAAACTGttggaagaaaaagaagttgaaaatGAGGTTGTAGAGGGGAATGATACGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGTGCAGCGTTCATACCGTGTGGACACACTTTCTGTAGAGTGTGTTCAAGGGAATTGTGGTTGAATCGAGGAAATTGTCCCCTTTGTAATCGTTCTATTCTCGAGATTCTTGACATTTTCTGA 612 0.4657 MSQLGLILQESLRPQREARTILGLLTEQMDGLDTGTTRRRSLKERLRFTGMGCCGATWVFRPIIRHQQQGDERVTEREATEQVQDPNPVEPECVNPGSSGSGMNLATALAAERQMRGSEETSSGEGGTTWRVSLMKLLEEKEVENEVVEGNDTVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGNCPLCNRSILEILDIF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04836 203 MobiDBLite consensus disorder prediction 69 98 - -
Tsu04g04836 203 PANTHER OS01G0917900 PROTEIN 17 203 - -
Tsu04g04836 203 SUPERFAMILY RING/U-box 145 200 - -
Tsu04g04836 203 SMART ring_2 155 192 IPR001841 -
Tsu04g04836 203 ProSiteProfiles Zinc finger RING-type profile. 155 193 IPR001841 -
Tsu04g04836 203 CDD RING-HC 155 192 - -
Tsu04g04836 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 202 IPR013083 -
Tsu04g04836 203 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 203 - -
Tsu04g04836 203 Pfam Zinc finger, C3HC4 type (RING finger) 152 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04836 Tsu-Chr4 55411465 55412393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04836 21 203 C3H Transcription Factor Family AT4G22250 53.535 1.69e-57 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04836 - - gmx:100792613 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04836 04 55411465 55412393 Tsu08g03487 08 52848407 52854392 PCT