Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04827 ATGGAAGTAGTAGTTCCTAGACAAGAACAGTCAAATCAACATACTGAGGATAATTTGAAGTTCTCGGGTTGCTCAAAAGCTTTTGGAAATTCAAAGAGAAAGGCTGAAGAAGAATGTGGTGGTAATGAGAAACCAGAACAAGAACCAGAATGGGAACAAAATACTATGGAATGTTTGAAGGAGGCTACAGTTGGACAAGAAGAACAGTTAAACCAGGACACTAACATTAAGCCGGAAAAAATCCCAAGATGCTCAAAAGATTATGGAATTTCATATAAGAGAAGATCTCAAGAATATGATACACATCATACCGATACAAATGCAGAAGGGGAAAAAGACGTTATCGTATGCTTAAGTGAGATACCCAATCCCCCATCTAAGAAAGCAGTTGAGCCAAAAAAGCCTGCTGTCAAAAACAAGAAATGGGAACTTGAAGATGATTTCTTGATTGACGAATTTGAACAGGATGAAGaaatgttttttcttcttaagaCAAAGAACAGGAGCAGAGCTGGTAGAATTGATAACACAACGCAGGGTGTTCAACAAAATACCCGGAAATGTCATCAGTGCATGAAAAAGGAAAGAACATCTTTTGTGCCTTGTACTAAATGTTCAAAAATGTACTGTATGCGATGCATCAATCAGTGGTATCCTGATATGTCTATAGAAGAAGTTACTGAAAGTTGCCCATTTTGCCTTAAAAATTGCAATTGCAATGTTTGCCTGCGCTCGAAAGGAACAATTAAGACATCTAACATGGATGTCACCAATTACGAAAAAGCTCAGTATCTGCACTACATGATCAACTTACTCCTTCCATATCTGAAACAAATTTGTCAAGAACAAAGTCAAGAGGAAGACATTGAAGCTAAAATTCGAGGCAAATCTTCTTCTGAGATTGAGATACCACAAAATCTTTGTGGTGATAATGAACGAGTCTATTGTGATTATTGTGCTACTTCAATTATTGACCTTCATCGGAGCTGTCCCAACTGTTCCTACGAGCTTTGCCTTAAATGTTGCCAAGAAATACGCGATGGAAGCATTACTCCCCGGGCTGAGCTGAAGTTCCAATATGTGAATAGGGGCTATGATTATATGCATGGTGGTGACCCTCTACCAGTGTCTTGTGATATAGAGGCTTCGGATGGTAATCTTGAGGCATCTACCAAGTGGAATGCTAAGAGTGATGGAAGTGTTGGTTGTGTCCCAAAGGAGATGGGGGGTTGTGGTAGTTCTGTGTTGGAGCTGAGGCGCATCCTTCCCCATGGGTGGATGTCTGACTTGGAAGTAAAAGCTCACGATATGCTGAAAATTTGGGAAGTTGAACAAAAAACTTTTCACCAGGAAGAAGCTGGGTCCAGCTACAACTCTATGAGAAAGGAATCCTTTACAGAAGGCACAAATGAGAGTAACATATACAGTTCAGAGTCAAGAGACATTTTAAGAGAAAGGATGTTGCTCTTCCAAAAACATTGGACTAATGGTGAACCAATTATAGTTCGTGATGTTCTAAAACAGGGTACAGGTCTGAGCTGGGAGCCAATGGTCATGTGGCGAGCATTATGTGATAATGTGGCTTCAGATATCAGTTCAAAAATGTCAGAAGTGAAGGCCATTGATTGCATGGCTAATTGTGAGGTTGCAATTAATACTCGTCAGTTCTTTAAAGGTTATATAGAGGGAAGAACATATGGAAATCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCTTCTGATAAATTTGAAGATCTTTTGCCCCGTCATTGTGATGAATTTATTCGTTTCTTGCCATTTCAACAGTACACCGATCCTCGGGCTGGAATACTTAACCTGGCTGTAAAGTTGCCAGCCCATGTCCTAAAACCTGATATGGGTCCAAAAACATATATTGCTTATGGGATTACTGAAGAACTTGGTAGGGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTGAACATTTTGACCCATACAGCAGAGGTATCATTAACTGATGAGCAACACACTACTATTTCCAAACTGAAAGAAGCACACAAGGCACAAGATGAGAGAGAACACTGTGCTCCAGACTGGGCTGCTGCATGTCTAAATTGTCGACCTTGCGACAACCGAAAACGTATAGATAATAAGGAAGTATTAGAATGCAAAGATACGGATAACCGTCCTATTGTAATCAGTGGGGATATCTTTCAAAATGATGTGTCTGAGGGGGACACTTTTCCTGCTATTTCTACAGAAAATGAAACAATGGTAACAAGTAGTGCCTTGTGGGACATATTTCGGAGAGAGGACACTGAAAAGTTAGGAGCATATCTTCGAAAACACTCGAAAAAATTCAGGCATACTTATTGTTCACCGGTTGAACAGGTTGTACATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCACAAGAAGAAGTTGAAGGAGGAGTTTGGTGTAGAACCGTGGACTTTTGAGCAAAAACTTGGAGAGGCAGTATTTATTCCTGCTGGATGCCCACATCAAGTCAGGAATCTCAAGTCATGCACAAAAGTTGCTGTAGACTTTGTGTCCCCAGAAAATGTCCAAGAGTGTCTTCGTTTAACTGAAGAATTTCGTCAGCTTCCAAAGAACCACAAAGTTAGAGAAGATAAACTTGAGATAAAGAAAATGATAGTCTATGCCGTTGATCAAGCTGTCAAAGACCTAAAAGCTTTACTCGATTGTTCTTGA 2739 0.4001 MEVVVPRQEQSNQHTEDNLKFSGCSKAFGNSKRKAEEECGGNEKPEQEPEWEQNTMECLKEATVGQEEQLNQDTNIKPEKIPRCSKDYGISYKRRSQEYDTHHTDTNAEGEKDVIVCLSEIPNPPSKKAVEPKKPAVKNKKWELEDDFLIDEFEQDEEMFFLLKTKNRSRAGRIDNTTQGVQQNTRKCHQCMKKERTSFVPCTKCSKMYCMRCINQWYPDMSIEEVTESCPFCLKNCNCNVCLRSKGTIKTSNMDVTNYEKAQYLHYMINLLLPYLKQICQEQSQEEDIEAKIRGKSSSEIEIPQNLCGDNERVYCDYCATSIIDLHRSCPNCSYELCLKCCQEIRDGSITPRAELKFQYVNRGYDYMHGGDPLPVSCDIEASDGNLEASTKWNAKSDGSVGCVPKEMGGCGSSVLELRRILPHGWMSDLEVKAHDMLKIWEVEQKTFHQEEAGSSYNSMRKESFTEGTNESNIYSSESRDILRERMLLFQKHWTNGEPIIVRDVLKQGTGLSWEPMVMWRALCDNVASDISSKMSEVKAIDCMANCEVAINTRQFFKGYIEGRTYGNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRFLPFQQYTDPRAGILNLAVKLPAHVLKPDMGPKTYIAYGITEELGRGDSVTKLHCDMSDAVNILTHTAEVSLTDEQHTTISKLKEAHKAQDEREHCAPDWAAACLNCRPCDNRKRIDNKEVLECKDTDNRPIVISGDIFQNDVSEGDTFPAISTENETMVTSSALWDIFRREDTEKLGAYLRKHSKKFRHTYCSPVEQVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVQECLRLTEEFRQLPKNHKVREDKLEIKKMIVYAVDQAVKDLKALLDCS 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04827 912 Pfam JmjC domain, hydroxylase 755 858 IPR003347 -
Tsu04g04827 912 MobiDBLite consensus disorder prediction 1 20 - -
Tsu04g04827 912 ProSiteProfiles JmjC domain profile. 608 875 IPR003347 -
Tsu04g04827 912 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 2 911 IPR045109 GO:0032454|GO:0033169
Tsu04g04827 912 SMART cupin_9 589 875 IPR003347 -
Tsu04g04827 912 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 183 254 IPR018866 -
Tsu04g04827 912 ProSiteProfiles Zinc finger RING-type profile. 188 233 IPR001841 -
Tsu04g04827 912 MobiDBLite consensus disorder prediction 1 54 - -
Tsu04g04827 912 MobiDBLite consensus disorder prediction 30 54 - -
Tsu04g04827 912 CDD cupin_RmlC-like 799 859 - -
Tsu04g04827 912 SUPERFAMILY Clavaminate synthase-like 489 911 - -
Tsu04g04827 912 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE 2 911 - -
Tsu04g04827 912 Gene3D Cupin 476 884 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04827 Tsu-Chr4 55331263 55337395 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tsu04g04827 JmjC 1.6e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04827 K15601 K21989 gmx:100797860 1276.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04827 04 55331263 55337395 Tsu04g04827 04 55331263 55337395 ECH