Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04823 aTGGCCATTTCAACTTCACTACTCTCACTTTCATGCTTCTTACTACCAATTGTTTTAAGCTTAGTTAATGTCTATGCAAAAGAGAATTACTATTATAACACTAAGACACCGGTCCTCAACGAGATAGATTCTTGTTGGCGCACGAAAACGAATTGGGCGTCAAACCGAAAAGCCTTAGCTAATTGTGCTATCGGTTTTGGCAAAGATGCGATTGGAGGGAAATATGGTGCAATATATATAGTTACAGATTCTTCTGATGACCCTGAAAATCCAAAACAAGGTACACTTCGTTATGGCGCAATCCAAACGAAGCCGCTTTGGATAATTTTTCAAAGGGACATGGTTATTGCATTAAAGAATGAACTTATTATGAATAGTTATAAGACTATTGATGGTAGAGGAGTTAAAGTTGAGATTGGAAATGGACCTTGTATTACAATACAAGGTGTTAGTCATGTTATTATACATGGTATTAGGATTCATGATTGTAAACCAAGTAAGGCTGGACTTGTTAGAAGTACTCCTGATCATGTCGGTCATCGACAAGGCTCGGATGGTGATGCTATTAGTATATTTGCTTCGTCGAATATTTGGATTGATCATTGTTTTTTGGCTAGTTGCAGTGATGGACTAATTGATATTATTCATGCCTCAACTGCTATTACCATTTCTAACAATTACTTTACTCAGCATGACAAAGTTATGTTGCTAGGACACAATGATGGTTACACAGCAGATAAAGTAATGAAAGTAACAATAGTCTTCAATCGGTTTGCTAGTGGACTAACTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCACACGTGGCCAATAACAAATATGATGAGTGGAAAATGTATGCTATAGGAGGAAGTTCTAACCCAACTATTTTAAGTGAAGGGAATTTTTTTATAGCACCAAATGACCATAATGCAAAACAGATTACAAAGAGGGAATCAAAGGGAAATTGGAAGAGTTGGAAATGGAGGTCTTCTAAGGATGCATTCTCAAATGGTGCTTATTTTATACCATCTGGTTATGGAAGTTGTGCACCAAATTATACACCTTCTCAATCTTTTGTAGCTGTTCCAGCTTATATGGTGCCTGCTATAACTCTCAATGCAGGTCCATTGAGTTGTTATGTTGGGAGGGCATGTTAA 1161 0.3712 MAISTSLLSLSCFLLPIVLSLVNVYAKENYYYNTKTPVLNEIDSCWRTKTNWASNRKALANCAIGFGKDAIGGKYGAIYIVTDSSDDPENPKQGTLRYGAIQTKPLWIIFQRDMVIALKNELIMNSYKTIDGRGVKVEIGNGPCITIQGVSHVIIHGIRIHDCKPSKAGLVRSTPDHVGHRQGSDGDAISIFASSNIWIDHCFLASCSDGLIDIIHASTAITISNNYFTQHDKVMLLGHNDGYTADKVMKVTIVFNRFASGLTERMPRVRFGYAHVANNKYDEWKMYAIGGSSNPTILSEGNFFIAPNDHNAKQITKRESKGNWKSWKWRSSKDAFSNGAYFIPSGYGSCAPNYTPSQSFVAVPAYMVPAITLNAGPLSCYVGRAC 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04823 386 Pfam Pectate lyase 121 304 IPR002022 -
Tsu04g04823 386 Gene3D - 39 379 IPR012334 -
Tsu04g04823 386 PANTHER PECTATE LYASE 2 385 - -
Tsu04g04823 386 PRINTS Pollen allergen Amb family signature 62 79 IPR018082 -
Tsu04g04823 386 PRINTS Pollen allergen Amb family signature 85 110 IPR018082 -
Tsu04g04823 386 PRINTS Pollen allergen Amb family signature 121 137 IPR018082 -
Tsu04g04823 386 PRINTS Pollen allergen Amb family signature 185 206 IPR018082 -
Tsu04g04823 386 PRINTS Pollen allergen Amb family signature 265 284 IPR018082 -
Tsu04g04823 386 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Tsu04g04823 386 PRINTS Pollen allergen Amb family signature 327 351 IPR018082 -
Tsu04g04823 386 PRINTS Pollen allergen Amb family signature 357 380 IPR018082 -
Tsu04g04823 386 SUPERFAMILY Pectin lyase-like 60 385 IPR011050 -
Tsu04g04823 386 SMART amb_all 113 310 IPR002022 -
Tsu04g04823 386 PANTHER PECTATE LYASE 18-RELATED 2 385 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04823 Tsu-Chr4 55301902 55303413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04823 7 386 Polysaccharide Lyase AT1G11920 65.365 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04823 K01728 - gmx:100807483 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04823 04 55301902 55303413 Tsu04g04823 04 55301902 55303413 ECH