Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04820 ATGTTAACATTTCCGATGAATCTCATGACTAATTGGtctgatgataataatgataatgataataatgatgatcAACCGCGAATTAATCGTGTAATTGTGGATGAAGTGGATTTCTTCTCAGATAGAAATGATAAATCATCTTCACCTGATGATGGTCATGTTTCAATGAAGATCAATAATGAGATTTACGATCCTCATTGCAATCTCGCCGCTGACCATGTCAACACTGGTTTACAACTCCTGATCAGTAACACCGGAAGTGATCAATCAATGGTGGATGATGTATCTTCAATAAACGCTGAAGATAAACGTGCCAAAATTGCTCAGGTGGAACAATTGCAAGAGGAGCTTCGATTTAAGAATGAAGAGAACCAAAAGCTGAAGGAAATGCTGAACACCATGAGAAGTAGCCACACAAACTTGCAAATGCGTTATGTCTCCTTGATGCAACAGAAACAGAACCACACAGATCACGATCAGATGGTCCAAGGAAAAGCTGAGGAGAAAGGAGATAGTGTGGTGGCTAGAAAGTTCATGAGGGGCACAGCAGAAGTAGATGATCAGCAAGTATCAAACTCTTCTAATTCAGATGAAAAAACTCGATCAAGCACACCCCAGAACAATCAGAAATTAGAGAGGGATCCAGACTCATCAGAACTAGTACAAGTTTGGGACCCAGTTAAGCGTCCCACATTAAACCCGCCCAGCGCCGCTGATCAATCCGCTGCTGAAGCCACTATGAGAAAAGCACGTGTCTCCGTCCGTGCCCGATCAGAAGCCCACATGATCAATGATGGATGCCAATGGCGAAAATATGGACAAAAAATGGCTAAGGGAAACCCTTGTCCTCGAGCTTATTACAGATGCACAATGGCTATGGGTTGCCCTGTTCGCAAACAAGTTCAACGTTGTGCGGAGGACAGAACAATTCTCATAACAACATATGAAGGGACGCATAGCCATCCTCTGCCACCTGCCGCTGTGGCAATGGCATCGACCACCGCAGCAGCTGCTACCGTGTTACTATCTGGTTCAATGTCAAGTGCTGATGGGGTGATCAATCCCAATATACTAGCCAGAATTCTTCCTAATTGCTCTTCTAGCATGGCCACACTCTCAGCATCAGCACCATTTCCTACTGTGACACTAGACCTTACACGCGACGCTACAGATAATAACCAAAATTCTAATTCCCAATTCCAGCTTGGACAGCCTCAAAACTTTGGATCAGGACAATTACCACAGGTAATTGCACAAGCACTTTATAACACATCCAAATTCTCTGGCCTTCAATTGTCTCAGGATGTTGGGGGATCTTCCCAATTGAATCATACTCAACAAGCATCATCACTCAGTGCTGCCATCACTTCAGATCCAAACTTCACCGCAGCACTCGCTGCGGCTATCTCCTCCCTAATTGGCGCTGCTCCTcccaacaataacaacaacaataatccCAATATCATCAACAGTACTACCTACAATCAGTAG 1491 0.4272 MLTFPMNLMTNWSDDNNDNDNNDDQPRINRVIVDEVDFFSDRNDKSSSPDDGHVSMKINNEIYDPHCNLAADHVNTGLQLLISNTGSDQSMVDDVSSINAEDKRAKIAQVEQLQEELRFKNEENQKLKEMLNTMRSSHTNLQMRYVSLMQQKQNHTDHDQMVQGKAEEKGDSVVARKFMRGTAEVDDQQVSNSSNSDEKTRSSTPQNNQKLERDPDSSELVQVWDPVKRPTLNPPSAADQSAAEATMRKARVSVRARSEAHMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAMGCPVRKQVQRCAEDRTILITTYEGTHSHPLPPAAVAMASTTAAAATVLLSGSMSSADGVINPNILARILPNCSSSMATLSASAPFPTVTLDLTRDATDNNQNSNSQFQLGQPQNFGSGQLPQVIAQALYNTSKFSGLQLSQDVGGSSQLNHTQQASSLSAAITSDPNFTAALAAAISSLIGAAPPNNNNNNNPNIINSTTYNQ 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04820 496 MobiDBLite consensus disorder prediction 185 211 - -
Tsu04g04820 496 SMART WRKY_cls 263 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g04820 496 SUPERFAMILY WRKY DNA-binding domain 256 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g04820 496 MobiDBLite consensus disorder prediction 181 246 - -
Tsu04g04820 496 MobiDBLite consensus disorder prediction 1 16 - -
Tsu04g04820 496 ProSiteProfiles WRKY domain profile. 258 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g04820 496 Gene3D WRKY domain 248 325 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g04820 496 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 16 485 IPR044810 GO:0003700
Tsu04g04820 496 Pfam WRKY DNA -binding domain 264 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g04820 496 PANTHER WRKY TRANSCRIPTION FACTOR 6 16 485 - -
Tsu04g04820 496 Coils Coil 103 137 - -
Tsu04g04820 496 MobiDBLite consensus disorder prediction 1 27 - -
Tsu04g04820 496 MobiDBLite consensus disorder prediction 475 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04820 Tsu-Chr4 55288500 55291055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04820 29 487 WRKY Transcription Factor Family AT1G62300 51.434 3.95e-130 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu04g04820 WRKY 6.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04820 - - mtr:MTR_4g132430 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04820 04 55288500 55291055 Tsu04g04820 04 55288500 55291055 ECH
Tsu08g03522 08 53270985 53273878 Tsu04g04820 04 55288500 55291055 ECH
Tsu02g04795 02 57149696 57153810 Tsu04g04820 04 55288500 55291055 ECH