Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04807 ATGGAATACACACACCATTATTCACCATTTTCTATCTTGGCATCAGAGCACTTAAGCTTGAAGGCTCTCGATCCATTAGACCTAACCATGTCCGCTGCAAACAAAGAACAGAAAAATGACCTTCCATCAACTGTTTCTGTCAAGCTGGACAGAGACAACTACCCTATTTGGAAATCCTTGGTTCTTCCATTAATTAGAGGCTGCAAATATGATGACTATATGCTAGGGACAAAGCAATGCCCAAATCAGTTTTTAACATCAACGGACAACACTAATAAAATCAATCCTGACTTTGAGGATTGGCAAGCCAATGATCAAGCCTTACTAGGCTGGCTGATGAACTCCATGACAGTTGATATTGCAACCCAAGTTCTGCACTGTGAAACTTCAAAGCAACTTTGGGATGAAGCTCAAAGCCTTGCCGGTGCACACACCAGATCCAAAATCATCTACTTGAAATCAGAATTTCACAACACACACAAAGGAGAGATGAAGATGGAGCAATACCTTGCTAAGATGAAAAATCTTGCTGACAAATTGAAGCTGGCTGGATCACCTATATCCAGTTCTGATCTGATGATTCAGACATTGAACGGATTGGATTCTGAATACAATCTGGTGGTTGCCAAACTGTCCGATCAGACCAACATAAGTTGGGTTGATTTGCAAGCCCAATTACTAGCTTTTGAAAGCAGATTGGACCAACTCAACAACTTCAACAATATCAACTTGAATGCATCTGCAAACTTTGCTAGCAAAAATGAGTCAGGAGGCAACAAATTCGGATCACGAGGCAATTGGAGAGGATCTAATTTCAGAGGCATGAGAGGAGGCAGAGGAAGAGCTAGGATGTCAAAACCACCAAAACTAATTTNNNNNNNNNNNNNNNNNNNNNGCCAGATATGCGGCAGAGTCGGTCACACTGCTGCACACTGTTATTATAGTTTTGATAAGTCCTATACAGGAAAAAATCAAAATGCTGAAGGTGAAGGAACTCATAGTGCTTTTGTAGCATCACCATACCATGGAGAAGACTATGAGTGGTATTTCGATAGTGGGGCTAGCAATCATGTCACACACCAAAGTGGCCAGCTGCATGATCTCAGTGAGAACAATGGTAAGAACTCACTACTTGTTGGTAATggtgaaaaattgaaaattttggcCTCTGGTTCCACTAATTTAAATGATGTAAAACTACATAATGTATTGTATGTCCCTGAAATCACCAAAAACTTGTTAAGTGTATCCAAGTTGACTAGTGACAATAATGCTCTTGTTGAATTTGATGAAAATTGTTGCTATGTGAAGGACAAACTGACAGGGAAGGCACTTCTAAAAGGGACACTTAAGGATGAACTATACCAACTCTCAACCAATAAAGAACCTTCAGCAAATAAAGATCCTTGTGCCTATATGTCACTAAAAGAAAATTGGCATAGGAAACTTGGACATCCCAACAATAAagtactggaaaagAAAGAACCTGACTACACTGCTTTAAAACCGTTTGGTTGTGCATGCTATCCCTGCCTCAAACCTTACAATCAACACAAACTTCAATTTCACACAACCAGATGTGTATTTTTGGGATACAGCAATTCTCACAAAGGCTATAAGTGTATCAATTCTCATGGAAGAGTGTTTGTGTCAAGGCATGTAGTCTTCAATGAGAATCATTTCCCGTTCCAAGAAGGCTTCCTTGATACAAGAAatcctataaaaattgttactAATGATACACCTATAGCATTTCCTTCTTTTCCTGCAGGTGTCACtactaacaatattgcagatCATCAAGAACCAGAATTAAATGATATCGACACTACAACAGATCCATCAGCTGAGAGCGATACGTTTGAGCATACAAATGAGAACAATCTCAATAATGGTGAAAATGAAGACTCAACGGAAGTCATTGGAAGAGAATCAGTGGAGGAAACCACTCAACCATTACCAGAAAATAATCCACCACCTGAGCAGGATATCACCAACACACACTGGATGAGAACAAGAAGCAAGGCTGGAGTATATAAGCCCAAACTTCCTTACATAGGGCTAACTGAGGCAACTAAAGAAGACAAGGAACCAGAAAGTGTAAGGGAAGCTATAAGCATACCCGAATGGCAAAAGGCAATGGATGCAGAATACAAGGCACTGATGAACAATAAGACCTGGACACTGATACCATTTCAGGGACAAGAAAATATCATTGACTCAAAGTGgatctacaaaacaaaatacaaagcAGATGGCACAATTGAGAGGAGGAAAGCAAGACTTGTTGTTAGAGGTTTTCAACAAACAGCAGGATTGGACTATGATGAAACATTCAGCCTAGTTGTCAAATCAAGTACGGTAAGGATCATTCTATCTATTGCAATACATCTGAATTGGGAGGTTAGACAACTAGACATAAATAATGCTTTCTTGAATGGAGATCTCAAAGAAAATGTTTTCATGCATCAACCTGAAGGATACATAGATCAAACCAAACCACATCATATATGCAGATTAAATAAGGCGATATATGGTCTAAAGCAAGCCCCAAGGGCCTGGTTTGATAGGTTGAGACACACCTTGTTGAGTTGGGGATTTCAAAACACCAAGAGTGACCCGTCTCTATCTGTCCTAAAAGAAACGGATCATACTACATTTCTACTCatctatgttgatgacataATAATAACTGGGAGTAGTAATAAGTTTCTAGAAGCCTTCATCAGTCAACTTAATCATATCTTTTCTCTAAAAGATCTTGGAAATTTACACTACTTCCTAGGAATTGAAGTTCATAGAGACACTAGTGGGATGTACTTAAAACAAACAAAGTACATAAGAGACCTACttaagaaattcaacatggaaaaTGCATCCTCCTGCCCCACACCAATGATAACTGGAAGACAATTCACGAAAGAAGGGGAGCCAATGTCTAATCCTACACTCTATAGACAGGCTATAGGTGCACTACAATACTTGACCAACACAAGACCTGATATAGCCTTTGCTGTCAACAAACTCAGTCAATACATGAGCTCTCCGACCACAGATCACTGGCAAGGAATAAAGAGAATACTCAGATACCTCCATGGTACCACAAACTTAGGCCTACACATCAAACCATCAACTGATCTTGACATAGCAGGATTCTCAGATGCAGATTGGGCCACTAGCATAGATGATAGAAAATCCATGGCAGGACAATGTGTGTTTCTTGGTGAAACTCTAATTTCGTGGGCTTCAAGAAAGCAAAAAGTGGTGTCCCGGTCAAGTACCGAATCAGAGTATAGAGCTTTAGCTGACCTTGCAGCTGAAGTGGCATGGCTCAAATCATTACTAGGAGAACTCAAAGTGCCAATACCTCGAAAGCCAATTTTGTGGTGTGACAACTTGAGCGCTAAGGCACTAGCCTCCAATCCGGTTATGCATGCAAGGTCCAAACATATAGAGATAGACGTGCACTACATACGTGATCAGGTCCTTCAAAATGAAATCACAGTTGCCTATGTACCTACTGCCGATCAAATTGCAGATTGTCTTACAAAAGCTCTTACTCACACTAGATTCAATATCATGAGAGACAAACTTGAGACTTATCCTTTCCTACTCCAACTCGAACTCACTCTACTCTCTCACTCACTCCCAGTGATGGCGGAGTCTGATTGGCCAAAGAAAGATAACCGTCGATTCCTTCATGTTGTATATCGTGTTGGTGACCTTGAACGAGCCatcaaGTTTTATACTGAGAGTCTTGGGTTTAAGCTTTTGAGGCAAAGAGATGTTCCAGCCGAGAAATACGCCAATGCTTTTGTTGGATTTGGCCATGAAACATCCTATTTTGCTATTGAATTGACATATAATTATGGGGTGACTTCGTATGATATTGGAGATGGCTTTGGACATTTTGGAATTGCAACTCAAGATgtttacAAATCGGTTGAGGACATTCGGGCCAAAGGCGGAAACATCACTAGGGAGCCTGGTCCAGTTGAGGGCGGAACAACTGTTATCGCCTTTGTGAAGGATCCTGATGGCTACACTTTTGCACTCATCCAAAGATCTATAATTCGTGACCCATTTATTCAAATATCGCTTCGTATTGGTGATTTAGAACGCGACATAAAGTTTTATGAAAAGGCTTTGGGCTTCAAGGTGTTGAGGAAGGTTGATAATCCTGAAAAGAAGTATACTATTGCTATACTTGGGTATGGAGAGGAGGAAGAGACAACAGTGTTGGAGTTGACATATAACTATGGTGTCACGGAATACTCTAAGGGAACTGGTTATGCACAGATTGCAATTGGTACCGATGATGTATACAAGAGCGCTGAGGTAATCGACCTAGTCGCAAAAGAGGTTGGAGGGAAGATCACTACCAAACCAGGGCCAGTTTCTGGCATTGGCACGAAAATTGTTGGTTTTTTAGACCCAAGCGGATGGAAAACTGTGTTGGTTGACAATGAAGATTTCCTAAAGGAACTTGAAGAGTGA 4497 0.3934 MEYTHHYSPFSILASEHLSLKALDPLDLTMSAANKEQKNDLPSTVSVKLDRDNYPIWKSLVLPLIRGCKYDDYMLGTKQCPNQFLTSTDNTNKINPDFEDWQANDQALLGWLMNSMTVDIATQVLHCETSKQLWDEAQSLAGAHTRSKIIYLKSEFHNTHKGEMKMEQYLAKMKNLADKLKLAGSPISSSDLMIQTLNGLDSEYNLVVAKLSDQTNISWVDLQAQLLAFESRLDQLNNFNNINLNASANFASKNESGGNKFGSRGNWRGSNFRGMRGGRGRARMSKPPKLIXXXXXXXXQICGRVGHTAAHCYYSFDKSYTGKNQNAEGEGTHSAFVASPYHGEDYEWYFDSGASNHVTHQSGQLHDLSENNGKNSLLVGNGEKLKILASGSTNLNDVKLHNVLYVPEITKNLLSVSKLTSDNNALVEFDENCCYVKDKLTGKALLKGTLKDELYQLSTNKEPSANKDPCAYMSLKENWHRKLGHPNNKVLEKKEPDYTALKPFGCACYPCLKPYNQHKLQFHTTRCVFLGYSNSHKGYKCINSHGRVFVSRHVVFNENHFPFQEGFLDTRNPIKIVTNDTPIAFPSFPAGVTTNNIADHQEPELNDIDTTTDPSAESDTFEHTNENNLNNGENEDSTEVIGRESVEETTQPLPENNPPPEQDITNTHWMRTRSKAGVYKPKLPYIGLTEATKEDKEPESVREAISIPEWQKAMDAEYKALMNNKTWTLIPFQGQENIIDSKWIYKTKYKADGTIERRKARLVVRGFQQTAGLDYDETFSLVVKSSTVRIILSIAIHLNWEVRQLDINNAFLNGDLKENVFMHQPEGYIDQTKPHHICRLNKAIYGLKQAPRAWFDRLRHTLLSWGFQNTKSDPSLSVLKETDHTTFLLIYVDDIIITGSSNKFLEAFISQLNHIFSLKDLGNLHYFLGIEVHRDTSGMYLKQTKYIRDLLKKFNMENASSCPTPMITGRQFTKEGEPMSNPTLYRQAIGALQYLTNTRPDIAFAVNKLSQYMSSPTTDHWQGIKRILRYLHGTTNLGLHIKPSTDLDIAGFSDADWATSIDDRKSMAGQCVFLGETLISWASRKQKVVSRSSTESEYRALADLAAEVAWLKSLLGELKVPIPRKPILWCDNLSAKALASNPVMHARSKHIEIDVHYIRDQVLQNEITVAYVPTADQIADCLTKALTHTRFNIMRDKLETYPFLLQLELTLLSHSLPVMAESDWPKKDNRRFLHVVYRVGDLERAIKFYTESLGFKLLRQRDVPAEKYANAFVGFGHETSYFAIELTYNYGVTSYDIGDGFGHFGIATQDVYKSVEDIRAKGGNITREPGPVEGGTTVIAFVKDPDGYTFALIQRSIIRDPFIQISLRIGDLERDIKFYEKALGFKVLRKVDNPEKKYTIAILGYGEEEETTVLELTYNYGVTEYSKGTGYAQIAIGTDDVYKSAEVIDLVAKEVGGKITTKPGPVSGIGTKIVGFLDPSGWKTVLVDNEDFLKELEE 1498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04807 1498 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 1232 1351 IPR004360 -
Tsu04g04807 1498 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 1365 1483 IPR004360 -
Tsu04g04807 1498 ProSitePatterns Glyoxalase I signature 1. 1234 1255 IPR018146 GO:0004462|GO:0046872
Tsu04g04807 1498 SUPERFAMILY DNA/RNA polymerases 724 1156 IPR043502 -
Tsu04g04807 1498 PANTHER LACTOYLGLUTATHIONE LYASE-LIKE PROTEIN 1222 1497 - -
Tsu04g04807 1498 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 1231 1355 IPR037523 -
Tsu04g04807 1498 TIGRFAM glyox_I: lactoylglutathione lyase 1222 1361 IPR004361 GO:0004462|GO:0046872
Tsu04g04807 1498 TIGRFAM glyox_I: lactoylglutathione lyase 1363 1492 IPR004361 GO:0004462|GO:0046872
Tsu04g04807 1498 MobiDBLite consensus disorder prediction 608 636 - -
Tsu04g04807 1498 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 1363 1488 IPR029068 -
Tsu04g04807 1498 MobiDBLite consensus disorder prediction 591 670 - -
Tsu04g04807 1498 Gene3D - 1358 1497 IPR029068 -
Tsu04g04807 1498 CDD GlxI_Ni 1233 1353 - -
Tsu04g04807 1498 Gene3D - 1214 1356 IPR029068 -
Tsu04g04807 1498 Pfam gag-polypeptide of LTR copia-type 101 234 - -
Tsu04g04807 1498 PANTHER LACTOYLGLUTATHIONE LYASE 1222 1497 - -
Tsu04g04807 1498 CDD RNase_HI_RT_Ty1 1051 1187 - -
Tsu04g04807 1498 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 1361 1489 IPR037523 -
Tsu04g04807 1498 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 1230 1355 IPR029068 -
Tsu04g04807 1498 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 724 967 IPR013103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04807 Tsu-Chr4 55203659 55211283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04807 696 1187 Receptor kinase-like Gene Family AT4G23160 42.485 4.81e-117 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04807 - - aip:107605630 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04807 04 55203659 55211283 Tsu04g04807 04 55203659 55211283 ECH
Tsu08g03549 08 53514297 53520158 Tsu04g04807 04 55203659 55211283 ECH
Tsu04g04807 04 55203659 55211283 Tsu08g03549 08 53514297 53520158 PCT