Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04797 ATGGGTTGTCACGGTAGCAAGGAACAGAAGAAAGACCATAGCCGCCACCACCGCCATCGATCATCCGCCACCGCAACTGGTGCCGCTGCTGCTGCCGGTGGTAGTACTAATTTCCAGTATCAGATTGTTCAACCTTCCTCCTCTCACGTTCAAACTTCATCaccaccaaaaccaaaaccagaaTCACATTCACATGCTTCAACAGCGACTACTACTACTACaacatcaaatccaaatccaattccAAAACCCTCTGCTTATGCCACTGCCACACCACATAATGTGAATGTGAGAACAGTGCAGAAAACAGACACAACCATATTAGGAAAACCATTTGAAGATATTAAAAAGTTCTATACTTTAGGTAAAGAATTGGGTCGAGGTCAATTTGGGATTACTTATTTTTGCACTGAGAATTCAACTGGTTTAAATTATGCTTGTAAATCTATATTAAAGAGGAAACTTGTTTCTAAAGCTGATAGAGAAGATATTAAGAGAGAGATTCAGATTTTGCAGCATTTATCTGGCCAACCAAATATTGTTGAATTTAAAGGTGCTTATGAGGATAGGTTTTCTGTTCATCTTGTTATGGAACTTTGTGCTGGTGGAGAGTTATTTGATAGAATCATAGCTCAAGGTCATTATTCTGAGAGAGCTGCTGCATCTATTTGTAGAGCTGTTGTTAATGTTGTGCACATTTGTCATTTTATGGGTGTATTGCATCGTGATTTAAAGCCCGAGAATTTCTTGCTTTCTAGTAAAGATGAAGGAGCAGCACTTAAAGCTACTGATTTTGGACTTTCTGTCTTCATTGAAGAAGGAAAGGTTTACCGTGATATGGTAGGAAGTGCTTACTATGTTGCTCCTGAGGTACTGCGTCGTAATTATGGAAAGGAAATAGACATTTGGAGTGCAGGCATCATATTGTATATTCTCCTTAGTGGTGTACCACCTTTTTGGGCTGAAACTGAAAAGGGAATATTTAATGCCATATTGGAAGGTGAACTAGACTTTGTTAGTGAACCATGGCCATCAATATCAGAGAGTGCTAAAGATCTAGTCAGAAAGATGCTGACACAGGATCCAAAGAAGAGGATTACTTCTACTCAAGTCCTTGAACACCCGTGGATGAGAGAAGGTGGAGAGGCCTCTGATAAACCAATTGATAGCGCAGTTCTATCTAGAATGAAACAATTCAGGGCAATGAATAAGTTCAAGAAACTTGCATTGAAGGTTATGGCTGAAAATCTATCAGAAGAAGAGATTAAAGGTCTCAAGGCAATGTTTGCAAATATGGACACTGATGGTAGTGGCACCATTACCTATGAAGAACTGAAGTCAGGCCTAGCACGAATTGGATCACGATTGTCTGAGCCTGAAGTGAAGCAACTTATGGAAGCTGCCGATGTTGATGGAAATGGCTCAATCGATTATCTTGAATTCATATCGGCTACAATGCATAGACACAGACTTGAACGAGATGAACATCTTTACAAAGCATTTCAGTATTTTGATAATGACAATAGTGGGCACATTACTAGAGAAGAATTGGAGACTGCCATGACAAAGCATGGAATGGGTGATGAAGCAACAATAAAGGAAATTATTTCTGAGGTGGATACAGATAATGATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGCGGAATGCCACACCAACCACAACTATTTTAA 1704 0.3862 MGCHGSKEQKKDHSRHHRHRSSATATGAAAAAGGSTNFQYQIVQPSSSHVQTSSPPKPKPESHSHASTATTTTTTSNPNPIPKPSAYATATPHNVNVRTVQKTDTTILGKPFEDIKKFYTLGKELGRGQFGITYFCTENSTGLNYACKSILKRKLVSKADREDIKREIQILQHLSGQPNIVEFKGAYEDRFSVHLVMELCAGGELFDRIIAQGHYSERAAASICRAVVNVVHICHFMGVLHRDLKPENFLLSSKDEGAALKATDFGLSVFIEEGKVYRDMVGSAYYVAPEVLRRNYGKEIDIWSAGIILYILLSGVPPFWAETEKGIFNAILEGELDFVSEPWPSISESAKDLVRKMLTQDPKKRITSTQVLEHPWMREGGEASDKPIDSAVLSRMKQFRAMNKFKKLALKVMAENLSEEEIKGLKAMFANMDTDGSGTITYEELKSGLARIGSRLSEPEVKQLMEAADVDGNGSIDYLEFISATMHRHRLERDEHLYKAFQYFDNDNSGHITREELETAMTKHGMGDEATIKEIISEVDTDNDGRINYEEFCAMMRSGMPHQPQLF 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04797 567 MobiDBLite consensus disorder prediction 1 92 - -
Tsu04g04797 567 Gene3D Phosphorylase Kinase; domain 1 121 204 - -
Tsu04g04797 567 CDD STKc_CAMK 118 376 - -
Tsu04g04797 567 ProSiteProfiles EF-hand calcium-binding domain profile. 456 491 IPR002048 GO:0005509
Tsu04g04797 567 CDD EFh 499 557 IPR002048 GO:0005509
Tsu04g04797 567 ProSiteProfiles Protein kinase domain profile. 119 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04797 567 ProSitePatterns EF-hand calcium-binding domain. 540 552 IPR018247 -
Tsu04g04797 567 ProSitePatterns EF-hand calcium-binding domain. 433 445 IPR018247 -
Tsu04g04797 567 SUPERFAMILY EF-hand 416 556 IPR011992 -
Tsu04g04797 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Tsu04g04797 567 ProSiteProfiles EF-hand calcium-binding domain profile. 527 562 IPR002048 GO:0005509
Tsu04g04797 567 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 68 561 - -
Tsu04g04797 567 SMART efh_1 531 559 IPR002048 GO:0005509
Tsu04g04797 567 SMART efh_1 424 452 IPR002048 GO:0005509
Tsu04g04797 567 SMART efh_1 496 524 IPR002048 GO:0005509
Tsu04g04797 567 SMART efh_1 460 488 IPR002048 GO:0005509
Tsu04g04797 567 MobiDBLite consensus disorder prediction 28 92 - -
Tsu04g04797 567 SUPERFAMILY Protein kinase-like (PK-like) 118 385 IPR011009 -
Tsu04g04797 567 ProSitePatterns EF-hand calcium-binding domain. 469 481 IPR018247 -
Tsu04g04797 567 Gene3D - 385 559 - -
Tsu04g04797 567 ProSitePatterns Protein kinases ATP-binding region signature. 125 152 IPR017441 GO:0005524
Tsu04g04797 567 PANTHER SERINE/THREONINE-PROTEIN KINASE 68 561 - -
Tsu04g04797 567 Pfam Protein kinase domain 119 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04797 567 ProSiteProfiles EF-hand calcium-binding domain profile. 492 526 IPR002048 GO:0005509
Tsu04g04797 567 Pfam EF-hand domain pair 495 557 IPR002048 GO:0005509
Tsu04g04797 567 Pfam EF-hand domain pair 425 485 IPR002048 GO:0005509
Tsu04g04797 567 ProSiteProfiles EF-hand calcium-binding domain profile. 420 455 IPR002048 GO:0005509
Tsu04g04797 567 SMART serkin_6 119 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04797 567 Gene3D Transferase(Phosphotransferase) domain 1 205 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04797 Tsu-Chr4 55131156 55136059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04797 63 565 EF-hand Containing Proteins AT4G04720 78.926 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu04g04797 Pkinase 1.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04797 K13412 - gmx:100816859 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04797 04 55131156 55136059 Tsu04g04797 04 55131156 55136059 ECH