Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04792 ATGATGCAACCTGGAGGACCTGGCATGGCTCCACACATCGCCCAACAATaccaacagcaacaacaacaaccctaCATGATGATGCCTCCTCAACCTCAACCCCAGACCCAACCTCCTCAGATGTGGGCCCCTAACGCTCAACCTCCTCCTCAATCGGCCCCTCctcaacaacaacctcaacctGCCAGCGCCGATGAGGTCCGTACTCTCTGGATCGGCGATTTGCAATACTGGATGGACGAAAACTATCTTTATCAATGTTTCTCTCACACCGGCGAGTGTGGATCTGTTAAAGTTATACGCAACAAGCAGACTAATCAATCTGAAGGTTATGGGTTTCTTGAGTTTACTAGTCGTGCTGGtgcagagagagttcttcaaaCGTATAATGGTACCATTATGCCAAATGGTGGGCAGAACTTTAGATTGAACTGGGCTACTTTTAGTTCTGGTGAGAAGCGTCATGATGATTCTCCGGATTACACCATATTTGTCGGAGACTTGGCTGCTGATGTTACTGATTATCATCTGACTGAAGTATTTAGAACTCGGTATAACTCAGTTAAGGGGGCTAAAGTTGTGATTGATAGGACTACTGGTAGGACAAAGGGTTATGGTTTTGTTAGGTTTGCAGATGAGAGTGAGCAAATGAGGGCAATGACCGAAATGCAAGGTGTTCTTTGTTCCACAAGACCCATGCGTATTGGACCAGCCTCTAACAAAAACCTTAACACACAGTCGTCAAAAGCTTCATATCAGAATCCTCAAGGAGGGGCACAGAACGAGAATGATCCAAATAATACAACCATTTTTGTTGGCAATTTGGATCCTAATGTCACGGATGATCATTTGAAACAAGTTTTTGGGCAGTATGGAGAACTGGTTCATGTTAAGATTCCATCAGGCAAGAGATGCGGGTTTGTACAATTTGCAGACAGGAACTCTGCAGAGGAGGCACTGCGTGTTTTAAATGGCACACTTCTAGGTGGACAAAATGTTCGGCTTTCATGGGGCCGAAGCCCAGCAAACAAACAGACTCAACAGGATCCAAACCAGTGGAATGGTGGTAGCAGTGGATACTTTGGATATCCTCAAGGTTATGAAAACTATGCTTATGCCCCTGCTGCTGGACAGGACCCCAATATGTATGGCAGTTATCCAGCGGGGTATGCAAATTACCAACCTCCTCAGCAACAACAGCAAATAGGATACAGTTAA 1218 0.4319 MMQPGGPGMAPHIAQQYQQQQQQPYMMMPPQPQPQTQPPQMWAPNAQPPPQSAPPQQQPQPASADEVRTLWIGDLQYWMDENYLYQCFSHTGECGSVKVIRNKQTNQSEGYGFLEFTSRAGAERVLQTYNGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNLNTQSSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDDHLKQVFGQYGELVHVKIPSGKRCGFVQFADRNSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQDPNQWNGGSSGYFGYPQGYENYAYAPAAGQDPNMYGSYPAGYANYQPPQQQQQIGYS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04792 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 148 IPR000504 GO:0003723
Tsu04g04792 405 MobiDBLite consensus disorder prediction 27 57 - -
Tsu04g04792 405 MobiDBLite consensus disorder prediction 391 405 - -
Tsu04g04792 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 340 IPR000504 GO:0003723
Tsu04g04792 405 SUPERFAMILY RNA-binding domain, RBD 255 366 IPR035979 GO:0003676
Tsu04g04792 405 Gene3D - 10 152 IPR012677 -
Tsu04g04792 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 333 IPR000504 GO:0003723
Tsu04g04792 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 135 IPR000504 GO:0003723
Tsu04g04792 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 226 IPR000504 GO:0003723
Tsu04g04792 405 CDD RRM2_SECp43_like 160 239 - -
Tsu04g04792 405 Gene3D - 153 246 IPR012677 -
Tsu04g04792 405 SUPERFAMILY RNA-binding domain, RBD 31 149 IPR035979 GO:0003676
Tsu04g04792 405 SUPERFAMILY RNA-binding domain, RBD 156 258 IPR035979 GO:0003676
Tsu04g04792 405 MobiDBLite consensus disorder prediction 1 65 - -
Tsu04g04792 405 CDD RRM3_NGR1_NAM8_like 267 338 - -
Tsu04g04792 405 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 15 402 - -
Tsu04g04792 405 CDD RRM1_SECp43_like 69 149 - -
Tsu04g04792 405 MobiDBLite consensus disorder prediction 338 358 - -
Tsu04g04792 405 MobiDBLite consensus disorder prediction 384 405 - -
Tsu04g04792 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 240 IPR000504 GO:0003723
Tsu04g04792 405 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 15 402 - -
Tsu04g04792 405 SMART rrm1_1 162 236 IPR000504 GO:0003723
Tsu04g04792 405 SMART rrm1_1 269 336 IPR000504 GO:0003723
Tsu04g04792 405 SMART rrm1_1 69 144 IPR000504 GO:0003723
Tsu04g04792 405 MobiDBLite consensus disorder prediction 236 269 - -
Tsu04g04792 405 Gene3D - 247 373 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04792 Tsu-Chr4 55092983 55097107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04792 162 333 Eukaryotic Initiation Factors Gene Family AT4G34110 31.111 4.37e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04792 - - gmx:100796848 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04792 04 55092983 55097107 Tsu08g03572 08 53757352 53761383 PCT