Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04790 ATGAGATACATCCAAGATGAGAATTCTCGCAAACAATGTTTTGATCGGAGAAAAAAAGGATTAAAATCAAAAATATCTGAAATTACTAAGTCTGGAGCAAAAGCTTGTTTGGTCGTGTACGATGAGAATAATGTGGAACTAATGACATGGCCAGAAGACATTGCAACGGTAAACTCCATGCTTCAAGAATATGAGCATCAAAAGATCGAGAAAAGTCCTACGGTATTTCATGCTAATGACTActttaaaattaagaaagatATGGCTAAAGCCGAGATTACCAAAGTGTGTAAAGATATCCTCGACATCAAGTATCCCACCTGGCATCCACATTTTAATCATATGGATGAGAAACAACTCAGAAACTTCATTGCTTTTATAGATGTTAAGATTAAAGGTTGTAATCGCAAAATTAACACGCTGAAACAACAGTGA 435 0.3448 MRYIQDENSRKQCFDRRKKGLKSKISEITKSGAKACLVVYDENNVELMTWPEDIATVNSMLQEYEHQKIEKSPTVFHANDYFKIKKDMAKAEITKVCKDILDIKYPTWHPHFNHMDEKQLRNFIAFIDVKIKGCNRKINTLKQQ 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04790 144 PANTHER PROTEIN, PUTATIVE-RELATED 1 142 - -
Tsu04g04790 144 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 44 IPR002100 GO:0003677|GO:0046983
Tsu04g04790 144 SUPERFAMILY SRF-like 1 68 IPR036879 GO:0003677|GO:0046983
Tsu04g04790 144 PANTHER MADS BOX PROTEIN 1 142 - -
Tsu04g04790 144 Gene3D - 6 66 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04790 Tsu-Chr4 55075801 55076235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04790 1 60 Type I MADS-box Gene Family AT3G05860 39.344 2.68e-07 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu04g04790 SRF-TF 5.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04790 - - mtr:MTR_4g107170 170.629